Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CE10_RS18015 Genome accession   NC_017646
Coordinates   3540726..3541931 (+) Length   401 a.a.
NCBI ID   WP_001161835.1    Uniprot ID   -
Organism   Escherichia coli O7:K1 str. CE10     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3535726..3546931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CE10_RS18000 (CE10_3473) - 3536241..3537917 (+) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -
  CE10_RS18005 (CE10_3474) kdsB 3537927..3538667 (+) 741 WP_000030745.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CE10_RS18010 (CE10_3475) - 3538664..3540691 (+) 2028 WP_000579517.1 capsular polysaccharide biosynthesis protein -
  CE10_RS18015 (CE10_3476) kpsS 3540726..3541931 (+) 1206 WP_001161835.1 capsular biosynthesis protein Regulator
  CE10_RS18020 (CE10_3477) - 3542081..3543310 (-) 1230 WP_000575410.1 alpha-2,8-polysialyltransferase family protein -
  CE10_RS18025 (CE10_3478) - 3543300..3544448 (-) 1149 WP_000197086.1 DUF6716 putative glycosyltransferase -
  CE10_RS18030 (CE10_3479) neuC 3544441..3545616 (-) 1176 WP_000723250.1 UDP-N-acetylglucosamine 2-epimerase -
  CE10_RS18035 - 3545613..3546868 (-) 1256 Protein_3467 GDSL-type esterase/lipase family protein -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 47858.21 Da        Isoelectric Point: 10.0398

>NTDB_id=41893 CE10_RS18015 WP_001161835.1 3540726..3541931(+) (kpsS) [Escherichia coli O7:K1 str. CE10]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNWVYYGGNTTNCQHNI
Y

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=41893 CE10_RS18015 WP_001161835.1 3540726..3541931(+) (kpsS) [Escherichia coli O7:K1 str. CE10]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGATGAAGACGCAGGTTAATTGGGTTTATTATGGGGGGAACACAACAAACTGCCAACATAATATA
TATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.007

0.387