Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GWK28_RS02325 Genome accession   NZ_CP047973
Coordinates   476937..477821 (+) Length   294 a.a.
NCBI ID   WP_000914774.1    Uniprot ID   N9LGJ0
Organism   Acinetobacter baumannii strain DETAB-P2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 471937..482821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK28_RS02300 (GWK28_02300) - 472336..473583 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  GWK28_RS02305 (GWK28_02305) wrbA 473871..474464 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  GWK28_RS02310 (GWK28_02310) - 474517..475092 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  GWK28_RS02315 (GWK28_02315) - 475165..475878 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  GWK28_RS02320 (GWK28_02320) - 476035..476706 (-) 672 WP_001193958.1 hypothetical protein -
  GWK28_RS02325 (GWK28_02325) tonB2 476937..477821 (+) 885 WP_000914774.1 energy transducer TonB Machinery gene
  GWK28_RS02330 (GWK28_02330) ybeY 477911..478387 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  GWK28_RS02335 (GWK28_02335) - 478397..479485 (-) 1089 WP_000122983.1 PhoH family protein -
  GWK28_RS02340 (GWK28_02340) miaB 479523..480974 (-) 1452 WP_000218140.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33622.48 Da        Isoelectric Point: 9.0935

>NTDB_id=418901 GWK28_RS02325 WP_000914774.1 476937..477821(+) (tonB2) [Acinetobacter baumannii strain DETAB-P2]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=418901 GWK28_RS02325 WP_000914774.1 476937..477821(+) (tonB2) [Acinetobacter baumannii strain DETAB-P2]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATCATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LGJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment