Detailed information NTG0041889

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CE10_RS16390
• Genome accession: NC_017646
• Coordinates: 3220110..3221102 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O7:K1 str. CE10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3215110..3226102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CE10_RS16365 (CE10_3161)	pphB	3216470..3217126 (+)	657	WP_001141299.1	protein-serine/threonine phosphatase	-
CE10_RS16370 (CE10_3162)	-	3217168..3217404 (-)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CE10_RS16375 (CE10_3163)	-	3217415..3218842 (-)	1428	WP_000863203.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CE10_RS16380 (CE10_3164)	-	3218842..3219435 (-)	594	WP_001237178.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CE10_RS16385 (CE10_3165)	-	3219582..3219989 (+)	408	WP_001208064.1	MarR family transcriptional regulator	-
CE10_RS16390 (CE10_3166)	rpoS	3220110..3221102 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CE10_RS16395 (CE10_3167)	nlpD	3221165..3222259 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CE10_RS16400 (CE10_3168)	pcm	3222444..3223070 (-)	627	WP_000254713.1	protein-L-isoaspartate O-methyltransferase	-
CE10_RS16405 (CE10_3169)	surE	3223064..3223825 (-)	762	WP_012602468.1	5'/3'-nucleotidase SurE	-
CE10_RS16410 (CE10_3170)	truD	3223806..3224855 (-)	1050	WP_000568912.1	tRNA pseudouridine(13) synthase TruD	-
CE10_RS16415 (CE10_3171)	ispF	3224852..3225331 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CE10_RS16420 (CE10_3172)	ispD	3225331..3226041 (-)	711	WP_000246132.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=41889 CE10_RS16390 WP_000081550.1 3220110..3221102(-) (rpoS) [Escherichia coli O7:K1 str. CE10]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=41889 CE10_RS16390 WP_000081550.1 3220110..3221102(-) (rpoS) [Escherichia coli O7:K1 str. CE10]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715