Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9191_RS08690 Genome accession   NZ_CP060979
Coordinates   1799577..1801001 (-) Length   474 a.a.
NCBI ID   WP_032247599.1    Uniprot ID   -
Organism   Escherichia coli strain EC3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794577..1806001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9191_RS08660 (H9191_08620) yeeZ 1794632..1795456 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  H9191_RS08665 (H9191_08625) yeeY 1795502..1796431 (+) 930 WP_032258477.1 LysR substrate-binding domain-containing protein -
  H9191_RS08670 (H9191_08630) yoeI 1796646..1796708 (+) 63 WP_010723108.1 membrane protein YoeI -
  H9191_RS08675 (H9191_08635) plaP 1796698..1798056 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H9191_RS08680 (H9191_08640) tsuA 1798235..1799293 (+) 1059 WP_032258476.1 thiosulfate utilization transporter TsuA/YeeE -
  H9191_RS08685 (H9191_08645) tsuB 1799307..1799534 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H9191_RS08690 (H9191_08650) sbcB 1799577..1801001 (-) 1425 WP_032247599.1 exodeoxyribonuclease I Machinery gene
  H9191_RS08695 (H9191_08655) - 1801183..1801989 (+) 807 Protein_1705 integrase family protein -
  H9191_RS08700 (H9191_08660) istB 1802056..1802838 (-) 783 WP_001300609.1 IS21-like element IS100kyp family helper ATPase IstB -
  H9191_RS08705 (H9191_08665) istA 1802835..1803857 (-) 1023 WP_000255944.1 IS21-like element IS100 family transposase -
  H9191_RS08710 (H9191_08670) - 1803946..1804320 (+) 375 Protein_1708 tyrosine-type recombinase/integrase -
  H9191_RS08715 (H9191_08675) - 1804301..1804492 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  H9191_RS08720 (H9191_08680) - 1804832..1804999 (-) 168 WP_049038799.1 hypothetical protein -
  H9191_RS08725 (H9191_08685) - 1805072..1805356 (-) 285 WP_241468315.1 ASCH domain-containing protein -
  H9191_RS08730 (H9191_08690) - 1805349..1805924 (-) 576 WP_241468316.1 ead/Ea22-like family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54339.59 Da        Isoelectric Point: 5.3498

>NTDB_id=418674 H9191_RS08690 WP_032247599.1 1799577..1801001(-) (sbcB) [Escherichia coli strain EC3]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=418674 H9191_RS08690 WP_032247599.1 1799577..1801001(-) (sbcB) [Escherichia coli strain EC3]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCATCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584