Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SALIVB_RS09715 Genome accession   NC_015760
Coordinates   2110692..2111402 (-) Length   236 a.a.
NCBI ID   WP_013991284.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2105692..2116402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS09695 (SALIVB_2022) treP 2106048..2107997 (-) 1950 WP_231844805.1 PTS system trehalose-specific EIIBC component -
  SALIVB_RS09700 (SALIVB_2024) - 2108137..2109123 (-) 987 WP_002886406.1 IS30 family transposase -
  SALIVB_RS09705 (SALIVB_2025) - 2109334..2109690 (+) 357 WP_013991281.1 hypothetical protein -
  SALIVB_RS10695 (SALIVB_2026) - 2109723..2110061 (+) 339 WP_013991282.1 hypothetical protein -
  SALIVB_RS09710 (SALIVB_2027) - 2110078..2110638 (+) 561 WP_041817289.1 TIGR01440 family protein -
  SALIVB_RS09715 (SALIVB_2028) treR 2110692..2111402 (-) 711 WP_013991284.1 trehalose operon repressor Regulator
  SALIVB_RS09720 (SALIVB_2029) - 2111510..2112496 (+) 987 WP_002886406.1 IS30 family transposase -
  SALIVB_RS09725 (SALIVB_2030) - 2112688..2113569 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  SALIVB_RS09730 (SALIVB_2031) - 2113773..2114759 (+) 987 WP_013991285.1 IS30 family transposase -
  SALIVB_RS09740 (SALIVB_2033) - 2115079..2116374 (-) 1296 WP_013991286.1 glutamyl-tRNA synthetase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27341.92 Da        Isoelectric Point: 6.6088

>NTDB_id=41854 SALIVB_RS09715 WP_013991284.1 2110692..2111402(-) (treR) [Streptococcus salivarius CCHSS3]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSNLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=41854 SALIVB_RS09715 WP_013991284.1 2110692..2111402(-) (treR) [Streptococcus salivarius CCHSS3]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTAGAGATACTATACGAAAGGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGTTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATCGAGCAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAATCTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTTTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGACGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAACTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAACGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTTGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGTCATCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602

Multiple sequence alignment