Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GWG03_RS02395 Genome accession   NZ_CP047924
Coordinates   446899..447345 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SR130     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441899..452345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWG03_RS02360 (GWG03_02355) - 442393..442596 (+) 204 WP_000087561.1 YqgQ family protein -
  GWG03_RS02365 (GWG03_02360) - 442593..443579 (+) 987 WP_000161314.1 ROK family glucokinase -
  GWG03_RS02370 (GWG03_02365) - 443579..443908 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  GWG03_RS02375 (GWG03_02370) - 443905..444528 (+) 624 WP_103147872.1 MBL fold metallo-hydrolase -
  GWG03_RS02380 (GWG03_02375) comGA 444580..445554 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  GWG03_RS02385 (GWG03_02380) comGB 445526..446596 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  GWG03_RS02390 (GWG03_02385) comGC 446610..446921 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  GWG03_RS02395 (GWG03_02390) comGD 446899..447345 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  GWG03_RS02400 (GWG03_02395) comGE 447332..447631 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  GWG03_RS02405 (GWG03_02400) comGF 447549..448046 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  GWG03_RS02410 (GWG03_02405) - 448143..448289 (+) 147 WP_001792109.1 hypothetical protein -
  GWG03_RS02415 (GWG03_02410) - 448279..448803 (+) 525 WP_001015120.1 shikimate kinase -
  GWG03_RS02420 (GWG03_02415) gcvT 448962..450053 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  GWG03_RS02425 (GWG03_02420) gcvPA 450073..451419 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=418453 GWG03_RS02395 WP_001788899.1 446899..447345(+) (comGD) [Staphylococcus aureus strain SR130]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=418453 GWG03_RS02395 WP_001788899.1 446899..447345(+) (comGD) [Staphylococcus aureus strain SR130]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment