Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GWG04_RS02395 Genome accession   NZ_CP047922
Coordinates   446900..447346 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SR231     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441900..452346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWG04_RS02360 (GWG04_02350) - 442394..442597 (+) 204 WP_000087561.1 YqgQ family protein -
  GWG04_RS02365 (GWG04_02355) - 442594..443580 (+) 987 WP_000161314.1 ROK family glucokinase -
  GWG04_RS02370 (GWG04_02360) - 443580..443909 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  GWG04_RS02375 (GWG04_02365) - 443906..444529 (+) 624 WP_103147872.1 MBL fold metallo-hydrolase -
  GWG04_RS02380 (GWG04_02370) comGA 444581..445555 (+) 975 WP_072419664.1 competence type IV pilus ATPase ComGA Machinery gene
  GWG04_RS02385 (GWG04_02375) comGB 445527..446597 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  GWG04_RS02390 (GWG04_02380) comGC 446611..446922 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  GWG04_RS02395 (GWG04_02385) comGD 446900..447346 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  GWG04_RS02400 (GWG04_02390) comGE 447333..447632 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  GWG04_RS02405 (GWG04_02395) comGF 447550..448047 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  GWG04_RS02410 (GWG04_02400) - 448144..448290 (+) 147 WP_001792109.1 hypothetical protein -
  GWG04_RS02415 (GWG04_02405) - 448280..448804 (+) 525 WP_001015120.1 shikimate kinase -
  GWG04_RS02420 (GWG04_02410) gcvT 448963..450054 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  GWG04_RS02425 (GWG04_02415) gcvPA 450074..451420 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=418408 GWG04_RS02395 WP_001788899.1 446900..447346(+) (comGD) [Staphylococcus aureus strain SR231]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=418408 GWG04_RS02395 WP_001788899.1 446900..447346(+) (comGD) [Staphylococcus aureus strain SR231]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment