Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GU926_RS11725 Genome accession   NZ_CP047897
Coordinates   2789183..2790562 (-) Length   459 a.a.
NCBI ID   WP_160692068.1    Uniprot ID   A0A6P1P1Q6
Organism   Nibribacter ruber strain BT10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2784183..2795562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU926_RS11700 (GU926_11700) - 2784518..2784856 (+) 339 WP_160692057.1 hypothetical protein -
  GU926_RS11705 (GU926_11705) - 2784899..2785861 (-) 963 WP_160692059.1 mechanosensitive ion channel family protein -
  GU926_RS11710 (GU926_11710) - 2785985..2786455 (-) 471 WP_160692061.1 hypothetical protein -
  GU926_RS11715 (GU926_11715) - 2786510..2787535 (-) 1026 WP_160692063.1 SPASM domain-containing protein -
  GU926_RS11720 (GU926_11720) - 2787652..2789085 (-) 1434 WP_160692066.1 redoxin domain-containing protein -
  GU926_RS11725 (GU926_11725) radA 2789183..2790562 (-) 1380 WP_160692068.1 DNA repair protein RadA Machinery gene
  GU926_RS11730 (GU926_11730) - 2790768..2791190 (+) 423 WP_160692070.1 hypothetical protein -
  GU926_RS11735 (GU926_11735) - 2791245..2792318 (+) 1074 WP_160692072.1 hypothetical protein -
  GU926_RS11740 (GU926_11740) - 2792631..2794046 (+) 1416 WP_198001410.1 rRNA methyltransferase -
  GU926_RS11745 (GU926_11745) - 2794172..2794984 (+) 813 WP_160692074.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50134.44 Da        Isoelectric Point: 6.4192

>NTDB_id=418380 GU926_RS11725 WP_160692068.1 2789183..2790562(-) (radA) [Nibribacter ruber strain BT10]
MAKIKTAYFCQSCGAQSAKWVGRCPACGEWNTYVEEVITREDVTPTSAWKVGTSSQQVASKPKPIAEITYSEQHRIITQD
GELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQIALSLKNQRVLYISGEESEQQIKMRAERLGAQHPNCFILTETGTQNI
FKQIEQLQPEVLIVDSIQTLHSSFIESGAGSVAQVRECTAELLKFAKESGTPVFLIGHITKEGSLAGPKILEHMVDTVLT
FEGDRHMTYRILRTTKNRFGSTSELGIYEMLGTGLREVSNPSEILISQREESFSGITIGGTMEGNRPLLIEVQSLVSPAT
YGTPQRTATGFDVKRLNMLLAVLEKRGGFKLGTQDVFLNIAGGLKVEDPALDLAICAALLSSFEDIAIPHTSCFAAEVGL
GGEVRAVHRIEQRISEAEKLGFQDIYISKYNKKGVDFSRFSIRIHAASRLEEVFSGLFG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=418380 GU926_RS11725 WP_160692068.1 2789183..2790562(-) (radA) [Nibribacter ruber strain BT10]
ATGGCTAAAATTAAAACAGCATATTTCTGCCAGAGCTGCGGAGCGCAGTCGGCTAAATGGGTGGGTCGTTGTCCGGCCTG
CGGCGAATGGAACACCTACGTGGAGGAAGTGATCACCCGCGAGGACGTGACGCCCACCTCAGCGTGGAAAGTGGGCACCA
GCAGCCAGCAGGTGGCCAGCAAGCCCAAGCCCATCGCAGAAATCACCTATTCAGAACAGCACCGCATCATTACCCAGGAT
GGCGAACTGAACCGCGTGTTGGGCGGTGGCATTGTGCCCGGCTCCATGGTGCTCATTGGCGGCGAGCCCGGCATAGGCAA
GTCCACGCTTATGTTGCAGATTGCCCTCAGCCTGAAGAACCAGCGCGTGCTGTACATTTCTGGGGAGGAAAGCGAACAGC
AGATAAAAATGCGCGCCGAGCGTCTGGGTGCTCAGCATCCCAACTGCTTTATCCTCACAGAGACGGGCACGCAGAATATC
TTTAAGCAGATAGAGCAACTCCAACCCGAAGTCCTGATCGTAGACTCCATTCAAACCCTCCACTCGTCTTTTATAGAAAG
CGGAGCTGGTAGTGTTGCCCAGGTGCGGGAGTGTACGGCAGAGTTGTTGAAGTTCGCGAAGGAAAGCGGTACGCCCGTGT
TTTTGATTGGGCACATCACCAAAGAAGGCTCGCTGGCTGGTCCTAAGATTCTGGAGCACATGGTAGACACCGTGCTGACG
TTTGAAGGCGACCGCCACATGACCTACCGCATTCTGCGCACCACCAAGAACCGGTTTGGCTCTACCTCAGAATTGGGGAT
TTATGAAATGCTGGGCACGGGCCTGCGGGAAGTGAGCAATCCATCTGAGATCCTGATTTCGCAGCGCGAAGAGTCTTTTA
GCGGCATTACCATTGGCGGCACTATGGAAGGCAATCGTCCGCTCTTGATTGAAGTGCAGAGTCTGGTAAGCCCTGCCACG
TATGGCACGCCCCAGCGCACGGCCACCGGCTTTGACGTAAAGCGCCTGAACATGCTTTTGGCGGTACTGGAGAAGCGCGG
TGGGTTTAAGCTAGGCACCCAGGATGTGTTCCTGAACATTGCCGGCGGTTTGAAGGTAGAAGACCCAGCCCTGGATCTGG
CCATCTGCGCCGCGTTGCTTTCCTCGTTTGAGGACATTGCCATACCGCATACCTCGTGTTTTGCCGCAGAAGTGGGCTTG
GGTGGCGAGGTACGGGCCGTTCATAGAATTGAACAGCGCATCTCTGAGGCAGAAAAATTAGGCTTTCAGGACATTTACAT
TTCTAAGTACAACAAAAAAGGCGTAGACTTCAGCCGGTTCAGCATCAGGATTCATGCGGCCAGCCGCTTAGAAGAAGTTT
TTAGTGGTTTGTTCGGTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-223)

Subunit ChlI of Mg-chelatase (ChlI)

(345-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1P1Q6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.817

94.989

0.521
  radA Streptococcus pneumoniae Rx1

49.783

100

0.499
  radA Streptococcus pneumoniae D39

49.783

100

0.499
  radA Streptococcus pneumoniae R6

49.783

100

0.499
  radA Streptococcus pneumoniae TIGR4

49.783

100

0.499
  radA Streptococcus mitis NCTC 12261

49.783

100

0.499
  radA Streptococcus mitis SK321

49.783

100

0.499

Multiple sequence alignment