Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   GV831_RS10815 Genome accession   NZ_CP047891
Coordinates   2175906..2176202 (+) Length   98 a.a.
NCBI ID   WP_010906316.1    Uniprot ID   A0A3N6L9Y1
Organism   Lactococcus lactis subsp. lactis strain WHH2311     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2170906..2181202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GV831_RS10780 (GV831_10730) - 2172834..2173070 (+) 237 WP_014570799.1 hypothetical protein -
  GV831_RS10785 (GV831_10735) - 2173083..2173433 (+) 351 WP_014570798.1 hypothetical protein -
  GV831_RS10790 (GV831_10740) - 2173446..2173745 (+) 300 WP_014570797.1 phage holin -
  GV831_RS10795 (GV831_10745) - 2173745..2174524 (+) 780 WP_014570796.1 peptidoglycan amidohydrolase family protein -
  GV831_RS10800 (GV831_10750) - 2174603..2175127 (+) 525 WP_014570795.1 GNAT family N-acetyltransferase -
  GV831_RS10805 (GV831_10755) comGC 2175274..2175543 (+) 270 WP_003129998.1 competence type IV pilus major pilin ComGC Machinery gene
  GV831_RS10810 (GV831_10760) comGD 2175503..2175934 (+) 432 WP_014570794.1 competence type IV pilus minor pilin ComGD Machinery gene
  GV831_RS10815 (GV831_10765) comGE 2175906..2176202 (+) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  GV831_RS10820 (GV831_10770) comGF 2176165..2176611 (+) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  GV831_RS10825 (GV831_10775) comGG 2176650..2176934 (+) 285 WP_003129993.1 competence type IV pilus minor pilin ComGG Machinery gene
  GV831_RS10830 (GV831_10780) - 2177024..2177461 (+) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  GV831_RS10835 (GV831_10785) - 2177458..2178300 (+) 843 WP_003129990.1 metal ABC transporter substrate-binding protein -
  GV831_RS10840 (GV831_10790) - 2178477..2179214 (+) 738 WP_003129989.1 metal ABC transporter ATP-binding protein -
  GV831_RS10845 (GV831_10795) - 2179207..2180016 (+) 810 WP_014570791.1 metal ABC transporter permease -
  GV831_RS10850 (GV831_10800) - 2180055..2180921 (-) 867 WP_003129984.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11076.95 Da        Isoelectric Point: 6.4684

>NTDB_id=418357 GV831_RS10815 WP_010906316.1 2175906..2176202(+) (comGE) [Lactococcus lactis subsp. lactis strain WHH2311]
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=418357 GV831_RS10815 WP_010906316.1 2175906..2176202(+) (comGE) [Lactococcus lactis subsp. lactis strain WHH2311]
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Lactococcus lactis subsp. cremoris KW2

68.041

98.98

0.673

Multiple sequence alignment