Detailed information NTG0418330

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9195_RS07850
• Genome accession: NZ_CP060953
• Coordinates: 1587821..1588813 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1582821..1593813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9195_RS07830 (H9195_07750)	ygbM	1583452..1584228 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
H9195_RS07835 (H9195_07755)	ygbN	1584317..1585681 (+)	1365	WP_000104433.1	GntP family transporter	-
H9195_RS07840 (H9195_07760)	-	1585824..1586867 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
H9195_RS07845 (H9195_07765)	-	1587092..1587643 (+)	552	WP_001179442.1	flavodoxin family protein	-
H9195_RS07850 (H9195_07770)	rpoS	1587821..1588813 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H9195_RS07855 (H9195_07775)	nlpD	1588876..1589970 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H9195_RS07860 (H9195_07780)	pcm	1590155..1590781 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
H9195_RS07865 (H9195_07785)	surE	1590775..1591536 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H9195_RS07870 (H9195_07790)	truD	1591517..1592566 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
H9195_RS07875 (H9195_07795)	ispF	1592563..1593042 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9195_RS07880 (H9195_07800)	ispD	1593042..1593752 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=418330 H9195_RS07850 WP_000081550.1 1587821..1588813(-) (rpoS) [Escherichia coli strain EC8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=418330 H9195_RS07850 WP_000081550.1 1587821..1588813(-) (rpoS) [Escherichia coli strain EC8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715