Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9196_RS23480 Genome accession   NZ_CP060950
Coordinates   4858462..4859889 (+) Length   475 a.a.
NCBI ID   WP_000980620.1    Uniprot ID   -
Organism   Escherichia coli strain EC9     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4853462..4864889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9196_RS23440 (H9196_23300) yeeW 4853646..4853840 (+) 195 WP_000988599.1 DUF5983 family protein -
  H9196_RS23445 (H9196_23305) - 4853886..4853966 (+) 81 Protein_4587 hypothetical protein -
  H9196_RS23450 (H9196_23310) - 4854255..4854401 (-) 147 Protein_4588 transposase domain-containing protein -
  H9196_RS23455 (H9196_23315) - 4854455..4854637 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H9196_RS23460 (H9196_23320) tmaR 4854738..4855067 (-) 330 WP_000450409.1 DUF496 family protein -
  H9196_RS23465 (H9196_23325) yeeA 4855239..4856297 (-) 1059 WP_001200905.1 FUSC family protein -
  H9196_RS23470 (H9196_23330) sbmC 4856495..4856968 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  H9196_RS23475 (H9196_23335) dacD 4857087..4858253 (-) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H9196_RS23480 (H9196_23340) sbcB 4858462..4859889 (+) 1428 WP_000980620.1 exodeoxyribonuclease I Machinery gene
  H9196_RS23485 (H9196_23345) tsuB 4859932..4860159 (-) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H9196_RS23490 (H9196_23350) tsuA 4860173..4861231 (-) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  H9196_RS23495 (H9196_23355) plaP 4861410..4862768 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H9196_RS23500 (H9196_23360) yoeI 4862758..4862820 (-) 63 WP_010723108.1 membrane protein YoeI -
  H9196_RS23505 (H9196_23365) yeeY 4863035..4863964 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H9196_RS23510 (H9196_23370) yeeZ 4864010..4864834 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=418309 H9196_RS23480 WP_000980620.1 4858462..4859889(+) (sbcB) [Escherichia coli strain EC9]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=418309 H9196_RS23480 WP_000980620.1 4858462..4859889(+) (sbcB) [Escherichia coli strain EC9]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577