Detailed information NTG0418240

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9196_RS04190
• Genome accession: NZ_CP060950
• Coordinates: 862371..863363 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 857371..868363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9196_RS04170 (H9196_04160)	otnK	858146..859408 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
H9196_RS04175 (H9196_04165)	ygbL	859405..860043 (+)	639	WP_001278994.1	aldolase	-
H9196_RS04180 (H9196_04170)	ygbM	860048..860824 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
H9196_RS04185 (H9196_04175)	ygbN	860913..862277 (+)	1365	WP_001402448.1	GntP family transporter	-
H9196_RS04190 (H9196_04180)	rpoS	862371..863363 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H9196_RS04195 (H9196_04185)	nlpD	863426..864520 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H9196_RS04200 (H9196_04190)	pcm	864705..865331 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H9196_RS04205 (H9196_04195)	surE	865325..866086 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H9196_RS04210 (H9196_04200)	truD	866067..867116 (-)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
H9196_RS04215 (H9196_04205)	ispF	867113..867592 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9196_RS04220 (H9196_04210)	ispD	867592..868302 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=418240 H9196_RS04190 WP_000081550.1 862371..863363(-) (rpoS) [Escherichia coli strain EC9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=418240 H9196_RS04190 WP_000081550.1 862371..863363(-) (rpoS) [Escherichia coli strain EC9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715