Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9197_RS05620 Genome accession   NZ_CP060946
Coordinates   1133499..1134926 (+) Length   475 a.a.
NCBI ID   WP_000980620.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 str. EC10     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128499..1139926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9197_RS05580 (H9197_05540) yeeW 1128683..1128877 (+) 195 WP_000988599.1 DUF5983 family protein -
  H9197_RS05585 (H9197_05545) - 1128923..1129003 (+) 81 Protein_1098 hypothetical protein -
  H9197_RS05590 (H9197_05550) - 1129292..1129438 (-) 147 Protein_1099 transposase domain-containing protein -
  H9197_RS05595 (H9197_05555) - 1129492..1129674 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H9197_RS05600 (H9197_05560) tmaR 1129775..1130104 (-) 330 WP_000450409.1 DUF496 family protein -
  H9197_RS05605 (H9197_05565) yeeA 1130276..1131334 (-) 1059 WP_001200905.1 FUSC family protein -
  H9197_RS05610 (H9197_05570) sbmC 1131532..1132005 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  H9197_RS05615 (H9197_05575) dacD 1132124..1133290 (-) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H9197_RS05620 (H9197_05580) sbcB 1133499..1134926 (+) 1428 WP_000980620.1 exodeoxyribonuclease I Machinery gene
  H9197_RS05625 (H9197_05585) tsuB 1134969..1135196 (-) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H9197_RS05630 (H9197_05590) tsuA 1135210..1136268 (-) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  H9197_RS05635 (H9197_05595) plaP 1136447..1137805 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H9197_RS05640 (H9197_05600) yoeI 1137795..1137857 (-) 63 WP_010723108.1 membrane protein YoeI -
  H9197_RS05645 (H9197_05605) yeeY 1138072..1139001 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H9197_RS05650 (H9197_05610) yeeZ 1139047..1139871 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=418159 H9197_RS05620 WP_000980620.1 1133499..1134926(+) (sbcB) [Escherichia coli O157:H7 str. EC10]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=418159 H9197_RS05620 WP_000980620.1 1133499..1134926(+) (sbcB) [Escherichia coli O157:H7 str. EC10]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577