Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9198_RS11915 Genome accession   NZ_CP060938
Coordinates   2493754..2495181 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain EC11     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2488754..2500181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9198_RS11885 (H9198_11790) yeeZ 2488809..2489633 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  H9198_RS11890 (H9198_11795) yeeY 2489679..2490608 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H9198_RS11895 (H9198_11800) yoeI 2490823..2490885 (+) 63 WP_010723108.1 membrane protein YoeI -
  H9198_RS11900 (H9198_11805) plaP 2490875..2492233 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H9198_RS11905 (H9198_11810) tsuA 2492412..2493470 (+) 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
  H9198_RS11910 (H9198_11815) tsuB 2493484..2493711 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H9198_RS11915 (H9198_11820) sbcB 2493754..2495181 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  H9198_RS11920 (H9198_11825) dacD 2495390..2496556 (+) 1167 WP_000830144.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H9198_RS11925 (H9198_11830) sbmC 2496675..2497148 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  H9198_RS11930 (H9198_11835) yeeA 2497346..2498404 (+) 1059 WP_001200890.1 FUSC family protein -
  H9198_RS11935 (H9198_11840) tmaR 2498576..2498905 (+) 330 WP_000450409.1 DUF496 family protein -
  H9198_RS11940 (H9198_11845) - 2499006..2499188 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H9198_RS11945 (H9198_11850) - 2499242..2499388 (+) 147 Protein_2328 transposase domain-containing protein -
  H9198_RS11950 (H9198_11855) - 2499677..2499757 (-) 81 Protein_2329 hypothetical protein -
  H9198_RS11955 (H9198_11860) yeeW 2499803..2499997 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=418116 H9198_RS11915 WP_000980539.1 2493754..2495181(-) (sbcB) [Escherichia coli strain EC11]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=418116 H9198_RS11915 WP_000980539.1 2493754..2495181(-) (sbcB) [Escherichia coli strain EC11]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581