Detailed information NTG0418103

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9198_RS08150
• Genome accession: NZ_CP060938
• Coordinates: 1697949..1698941 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1692949..1703941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9198_RS08120 (H9198_08045)	ispD	1693010..1693720 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H9198_RS08125 (H9198_08050)	ispF	1693720..1694199 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9198_RS08130 (H9198_08055)	truD	1694196..1695245 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H9198_RS08135 (H9198_08060)	surE	1695226..1695987 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H9198_RS08140 (H9198_08065)	pcm	1695981..1696607 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H9198_RS08145 (H9198_08070)	nlpD	1696792..1697886 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H9198_RS08150 (H9198_08075)	rpoS	1697949..1698941 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H9198_RS08155 (H9198_08080)	ygbN	1699035..1700399 (-)	1365	WP_070749950.1	GntP family transporter	-
H9198_RS08160 (H9198_08085)	ygbM	1700488..1701264 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
H9198_RS08165 (H9198_08090)	ygbL	1701269..1701907 (-)	639	WP_001278994.1	aldolase	-
H9198_RS08170 (H9198_08095)	otnK	1701904..1703166 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=418103 H9198_RS08150 WP_000081550.1 1697949..1698941(+) (rpoS) [Escherichia coli strain EC11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=418103 H9198_RS08150 WP_000081550.1 1697949..1698941(+) (rpoS) [Escherichia coli strain EC11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715