Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SALIVB_RS02270 Genome accession   NC_015760
Coordinates   432066..433871 (+) Length   601 a.a.
NCBI ID   WP_013990147.1    Uniprot ID   A0AB37CPF2
Organism   Streptococcus salivarius CCHSS3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 427066..438871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS02250 (SALIVB_0448) - 427651..428490 (+) 840 WP_013990143.1 CHAP domain-containing protein -
  SALIVB_RS10925 - 428928..429772 (-) 845 Protein_385 IS3 family transposase -
  SALIVB_RS02265 (SALIVB_0452) - 431096..432055 (+) 960 WP_013990146.1 competence protein CoiA -
  SALIVB_RS02270 (SALIVB_0453) pepF 432066..433871 (+) 1806 WP_013990147.1 oligoendopeptidase F Regulator
  SALIVB_RS02275 (SALIVB_0454) - 434083..435303 (+) 1221 WP_013990148.1 OFA family MFS transporter -
  SALIVB_RS02280 (SALIVB_0455) - 435375..436082 (+) 708 WP_013990149.1 O-methyltransferase -
  SALIVB_RS02285 (SALIVB_0456) - 436144..437286 (+) 1143 WP_002886735.1 peptidyl-prolyl cis-trans isomerase -
  SALIVB_RS10840 - 437355..437492 (+) 138 WP_153300621.1 hypothetical protein -
  SALIVB_RS02290 (SALIVB_0458) - 437625..438110 (+) 486 WP_013990151.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69090.09 Da        Isoelectric Point: 4.5615

>NTDB_id=41810 SALIVB_RS02270 WP_013990147.1 432066..433871(+) (pepF) [Streptococcus salivarius CCHSS3]
MSDNRTHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMTLDDKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYSIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=41810 SALIVB_RS02270 WP_013990147.1 432066..433871(+) (pepF) [Streptococcus salivarius CCHSS3]
ATGTCAGACAATCGTACTCATTTAGAAGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACTGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTTTTGGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTGTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGGCTTTACCAAGAGTACCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGACCTTGGATGATAAGAAATTAGCTGAGTTTAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGCCTTTTGGCAAACAAGGACCACGTTCTTTCCCAAGAAGCTGAAGAGCTCTTGGCAGCAGCC
GGTGATATTTTCAACGGTCCAACGGACACCTTCAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
TCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACTCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTATGGGACTTATGAGCAGTTCCAACATACTTATGCACAAACACTCCAAGGCGTTGTCAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCGGCTAACTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTACACCGTTACCTAGATTTGCGTAAGAAGGTCTTGGGAC
TTGATGAGCTTAAGATGTATGACGTCTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCTCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGTTCAGGTGCATACTCAGGTGGTGCCTACGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGACACTTTGGATAATCTCTTTACCTTGGTTCACGAGACTGGTCACAGTTTGCATTCAACTTTCACACGTCAGACT
CAACCATATGTTTACGGAGATTACTCAATCTTCTTGGCAGAAATTGCGTCTACAACCAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAAGTTAAAGATGACAAGACACGCTTTGCTATCCTTAACCACTATTTGGATGGCTTCAAGGGAACTGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAACATGCTATCCATGAAGCGGATGCATCCGGTCAGATTTTGACAGCGGACTTC
ATGAATAAGCTTTACGCAGACCTCAATGAGAAATACTATAACCTCAAAGCTGAGGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGATTTGCTGCGGCAAGCTACTTGGCTG
AAAAAATTGTTCACGGTACTGAAGAAGATAAAGAAGCTTACCTTACTTACCTTAAGGCAGGAAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTAGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
TGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTGCACCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.501

100

0.995

Multiple sequence alignment