Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SALIVB_RS02150 Genome accession   NC_015760
Coordinates   404702..406516 (+) Length   604 a.a.
NCBI ID   WP_013990129.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 399702..411516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS02130 (SALIVB_0424) gdhA 400327..401679 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  SALIVB_RS02135 (SALIVB_0425) - 401960..403501 (+) 1542 WP_231844795.1 YfhO family protein -
  SALIVB_RS02140 (SALIVB_0426) - 403659..404069 (+) 411 WP_013990127.1 peptide deformylase -
  SALIVB_RS02145 (SALIVB_0427) rcrR 404255..404698 (+) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SALIVB_RS02150 (SALIVB_0428) rcrP 404702..406516 (+) 1815 WP_013990129.1 ABC transporter ATP-binding protein Regulator
  SALIVB_RS02155 (SALIVB_0429) rcrQ 406506..408284 (+) 1779 WP_013990130.1 ABC transporter ATP-binding protein Regulator
  SALIVB_RS02160 (SALIVB_0430) - 408392..409015 (+) 624 WP_013990131.1 GNAT family N-acetyltransferase -
  SALIVB_RS02165 (SALIVB_0431) - 409164..409787 (+) 624 WP_013990132.1 GTP pyrophosphokinase family protein -
  SALIVB_RS02170 (SALIVB_0432) - 409789..410466 (+) 678 WP_013990133.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67055.70 Da        Isoelectric Point: 5.9443

>NTDB_id=41807 SALIVB_RS02150 WP_013990129.1 404702..406516(+) (rcrP) [Streptococcus salivarius CCHSS3]
MFKIFKRLTTKELIMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRIRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMENKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPKEVGAVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELDEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=41807 SALIVB_RS02150 WP_013990129.1 404702..406516(+) (rcrP) [Streptococcus salivarius CCHSS3]
ATGTTTAAAATTTTTAAACGTTTGACGACAAAAGAGTTAATCATGATTGTCTTAGCGGTGATTTTTGTTTGCTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGATATTACGACACTCTTATCAACTAAGGGAACTAAAGCGTCGGATA
TTTTTGCCTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGGTTTATGGCCTCTGTAGTGGTT
GGTTTCTTAGCTGCCAGAACAGCGGCAAGTTTTACCACCCGTATTCGTGATGATATCTTCCATCAGGTTCTAGATTTTTC
GGATGCAGAGATCAAGAAATTCTCAATTCCTAGTCTTTTGACCCGTACGACAAATGATATTACCCAATTGCAGATGGTAC
TTACCATGGGGTTACAGGTTATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGA
AATTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCATTCTCATGCTTTTCCTCTTGATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACAGGAATTCGTGTGGTGCGTG
CCTATAACGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAATCTCTTTATCGGT
CGTTCTTTTGCCTTACTGACACCGGTGATGACTGCTGTATCAAGTGGTTTGACACTAGCTATTTATTGGATTGGTGCGCA
TTTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCCATGGAAAATAAGGTCCATCTCTTTTCAG
ACATGGTGGTTTATTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTTGTTTTCTTCCTTCTTCCA
CGTGCAGTTGTAGCAGCTGGTCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAACCTAAAGAAGTGGGCGCTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGTGACACGGTGGCATTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGAACGATCAAGGTTGACGGTGTCGATGTGCGACATTATGACCATGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAGAAGGCTGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGCAATAACAGTCCTCTTGATGATGCTAAGATTTGGGAAGCCCTTGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAAGTTGCCCAAGCTGGGTCTAACTTCTCAGGTGGACAGAAGCAACGTTTGGCTATTGC
GCGTGCTTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCCTTCTCAGCCTTGGACTATAAGACCGATCGTAAGT
TACGTCAAGAATTGGATGAAAAAACACAAGATATGACCAAGTTGATTGTTGCCCAACGTATCTCTACTATTATGGATGCG
GACCAAATCTTGGTACTTGATCAAGGTAAAGTCGTTGGTCAAGGAACTCACAAGGAACTCTTGGCAAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.934

100

0.68

Multiple sequence alignment