Detailed information NTG0041806

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: UMNK88_RS17045
• Genome accession: NC_017641
• Coordinates: 3293185..3294177 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli UMNK88
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3288185..3299177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UMNK88_RS17025 (UMNK88_3411)	otnK	3288960..3290222 (+)	1263	WP_000590404.1	3-oxo-tetronate kinase	-
UMNK88_RS17030 (UMNK88_3412)	ygbL	3290219..3290857 (+)	639	WP_001278994.1	aldolase	-
UMNK88_RS17035 (UMNK88_3413)	ygbM	3290862..3291638 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
UMNK88_RS17040 (UMNK88_3414)	ygbN	3291727..3293091 (+)	1365	WP_000104429.1	GntP family transporter	-
UMNK88_RS17045 (UMNK88_3415)	rpoS	3293185..3294177 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
UMNK88_RS17050 (UMNK88_3416)	nlpD	3294240..3295334 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
UMNK88_RS17055 (UMNK88_3418)	pcm	3295519..3296145 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
UMNK88_RS17060 (UMNK88_3419)	surE	3296139..3296900 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
UMNK88_RS17065 (UMNK88_3420)	truD	3296881..3297930 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
UMNK88_RS17070 (UMNK88_3421)	ispF	3297927..3298406 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
UMNK88_RS17075 (UMNK88_3422)	ispD	3298406..3299116 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=41806 UMNK88_RS17045 WP_000081550.1 3293185..3294177(-) (rpoS) [Escherichia coli UMNK88]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=41806 UMNK88_RS17045 WP_000081550.1 3293185..3294177(-) (rpoS) [Escherichia coli UMNK88]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715