Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9201_RS08860 Genome accession   NZ_CP060924
Coordinates   1856920..1858347 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain EC14     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1851920..1863347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9201_RS08830 (H9201_08770) yeeZ 1851975..1852799 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  H9201_RS08835 (H9201_08775) yeeY 1852845..1853774 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H9201_RS08840 (H9201_08780) yoeI 1853989..1854051 (+) 63 WP_010723108.1 membrane protein YoeI -
  H9201_RS08845 (H9201_08785) plaP 1854041..1855399 (+) 1359 WP_059334211.1 putrescine/proton symporter PlaP -
  H9201_RS08850 (H9201_08790) tsuA 1855578..1856636 (+) 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
  H9201_RS08855 (H9201_08795) tsuB 1856650..1856877 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H9201_RS08860 (H9201_08800) sbcB 1856920..1858347 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  H9201_RS08865 (H9201_08805) dacD 1858556..1859722 (+) 1167 WP_241415872.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H9201_RS08870 (H9201_08810) sbmC 1859841..1860314 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  H9201_RS08875 (H9201_08815) yeeA 1860512..1861570 (+) 1059 WP_001200890.1 FUSC family protein -
  H9201_RS08880 (H9201_08820) tmaR 1861742..1862071 (+) 330 WP_000450409.1 DUF496 family protein -
  H9201_RS08885 (H9201_08825) - 1862172..1862354 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H9201_RS08890 (H9201_08830) - 1862408..1862554 (+) 147 Protein_1743 transposase domain-containing protein -
  H9201_RS08895 (H9201_08835) - 1862843..1862923 (-) 81 Protein_1744 hypothetical protein -
  H9201_RS08900 (H9201_08840) yeeW 1862969..1863163 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=417855 H9201_RS08860 WP_000980539.1 1856920..1858347(-) (sbcB) [Escherichia coli strain EC14]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=417855 H9201_RS08860 WP_000980539.1 1856920..1858347(-) (sbcB) [Escherichia coli strain EC14]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581