Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   H9202_RS22130 Genome accession   NZ_CP060919
Coordinates   4504135..4504611 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain EC15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4499135..4509611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9202_RS22090 (H9202_21895) istA 4499242..4500783 (-) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  H9202_RS22095 (H9202_21900) - 4501377..4501553 (-) 177 Protein_4326 helix-turn-helix domain-containing protein -
  H9202_RS25945 - 4501816..4501950 (-) 135 Protein_4327 transcriptional regulator -
  H9202_RS22100 (H9202_21905) - 4501920..4502069 (-) 150 Protein_4328 hypothetical protein -
  H9202_RS22105 (H9202_21910) - 4502175..4502351 (-) 177 WP_000839286.1 DUF957 domain-containing protein -
  H9202_RS22110 (H9202_21915) - 4502368..4502856 (-) 489 WP_000761690.1 DUF5983 family protein -
  H9202_RS22115 (H9202_21920) - 4502853..4503230 (-) 378 WP_000854759.1 TA system toxin CbtA family protein -
  H9202_RS22120 (H9202_21925) - 4503320..4503688 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  H9202_RS22125 (H9202_21930) - 4503851..4504072 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  H9202_RS22130 (H9202_21935) radC 4504135..4504611 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  H9202_RS22135 (H9202_21940) - 4504627..4505100 (-) 474 WP_000855059.1 antirestriction protein -
  H9202_RS22140 (H9202_21945) - 4505440..4506258 (-) 819 WP_042631095.1 DUF932 domain-containing protein -
  H9202_RS22145 (H9202_21950) - 4506376..4506571 (-) 196 Protein_4337 DUF905 family protein -
  H9202_RS22150 (H9202_21955) - 4506642..4506833 (-) 192 Protein_4338 autotransporter outer membrane beta-barrel domain-containing protein -
  H9202_RS22155 (H9202_21960) istA 4506917..4507939 (+) 1023 WP_000255946.1 IS21-like element IS100 family transposase -
  H9202_RS22160 (H9202_21965) istB 4507936..4508718 (+) 783 WP_001317493.1 IS21-like element IS100kyp family helper ATPase IstB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=417813 H9202_RS22130 WP_001186775.1 4504135..4504611(-) (radC) [Escherichia coli strain EC15]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=417813 H9202_RS22130 WP_001186775.1 4504135..4504611(-) (radC) [Escherichia coli strain EC15]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment