Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9202_RS10615 Genome accession   NZ_CP060919
Coordinates   2165540..2166967 (-) Length   475 a.a.
NCBI ID   WP_001374015.1    Uniprot ID   -
Organism   Escherichia coli strain EC15     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2160540..2171967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9202_RS10580 (H9202_10490) hisL 2161124..2161174 (-) 51 WP_001364200.1 his operon leader peptide -
  H9202_RS10585 (H9202_10495) yefM 2161457..2161708 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  H9202_RS10590 (H9202_10500) yoeB 2161705..2161959 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  H9202_RS10595 (H9202_10505) yeeZ 2162042..2162866 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  H9202_RS10600 (H9202_10510) yeeY 2162912..2163841 (+) 930 WP_001374016.1 LysR substrate-binding domain-containing protein -
  H9202_RS10605 (H9202_10515) yoeI 2164056..2164118 (+) 63 WP_010723108.1 membrane protein YoeI -
  H9202_RS10610 (H9202_10520) plaP 2164108..2165466 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H9202_RS10615 (H9202_10525) sbcB 2165540..2166967 (-) 1428 WP_001374015.1 exodeoxyribonuclease I Machinery gene
  H9202_RS10620 (H9202_10530) dacD 2167176..2168342 (+) 1167 WP_001374019.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H9202_RS10625 (H9202_10535) sbmC 2168461..2168934 (+) 474 WP_001374018.1 DNA gyrase inhibitor SbmC -
  H9202_RS10630 (H9202_10540) yeeA 2169132..2170190 (+) 1059 WP_001200890.1 FUSC family protein -
  H9202_RS10635 (H9202_10545) tmaR 2170362..2170691 (+) 330 WP_001374017.1 DUF496 family protein -
  H9202_RS10640 (H9202_10550) - 2170792..2170977 (-) 186 Protein_2075 EutP/PduV family microcompartment system protein -
  H9202_RS10645 (H9202_10555) - 2171028..2171174 (+) 147 Protein_2076 transposase domain-containing protein -
  H9202_RS10650 (H9202_10560) - 2171463..2171543 (-) 81 Protein_2077 hypothetical protein -
  H9202_RS10655 (H9202_10565) yeeW 2171589..2171783 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54496.83 Da        Isoelectric Point: 5.6070

>NTDB_id=417782 H9202_RS10615 WP_001374015.1 2165540..2166967(-) (sbcB) [Escherichia coli strain EC15]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELNSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=417782 H9202_RS10615 WP_001374015.1 2165540..2166967(-) (sbcB) [Escherichia coli strain EC15]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGAATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579