Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   UMNK88_RS02590 Genome accession   NC_017641
Coordinates   530406..531011 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli UMNK88     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 525406..536011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMNK88_RS02560 (UMNK88_519) rsmS 526111..526272 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  UMNK88_RS02565 (UMNK88_520) priC 526286..526813 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  UMNK88_RS02570 (UMNK88_521) ybaN 526883..527260 (+) 378 WP_001188905.1 DUF454 family protein -
  UMNK88_RS02575 (UMNK88_522) apt 527413..527964 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  UMNK88_RS02580 (UMNK88_523) dnaX 528093..530024 (+) 1932 WP_000122020.1 DNA polymerase III subunit gamma/tau -
  UMNK88_RS02585 (UMNK88_524) ybaB 530077..530406 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  UMNK88_RS02590 (UMNK88_525) recR 530406..531011 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  UMNK88_RS02595 (UMNK88_526) htpG 531121..532995 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  UMNK88_RS02600 (UMNK88_527) adk 533176..533820 (+) 645 WP_001220233.1 adenylate kinase -
  UMNK88_RS02605 (UMNK88_529) hemH 534056..535018 (+) 963 WP_001250103.1 ferrochelatase -
  UMNK88_RS02610 (UMNK88_528) aes 535015..535974 (-) 960 WP_000801804.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=41772 UMNK88_RS02590 WP_001195025.1 530406..531011(+) (recR) [Escherichia coli UMNK88]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=41772 UMNK88_RS02590 WP_001195025.1 530406..531011(+) (recR) [Escherichia coli UMNK88]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment