Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3S83_RS07940 Genome accession   NZ_CP047843
Coordinates   1624824..1625270 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_620     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619824..1630270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S83_RS07910 (E3S83_07910) gcvPA 1620750..1622096 (-) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E3S83_RS07915 (E3S83_07915) gcvT 1622116..1623207 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S83_RS07920 (E3S83_07920) - 1623366..1623890 (-) 525 WP_001015123.1 shikimate kinase -
  E3S83_RS07925 (E3S83_07925) - 1623880..1624026 (-) 147 WP_001789879.1 hypothetical protein -
  E3S83_RS07930 (E3S83_07930) comGF 1624123..1624620 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S83_RS07935 (E3S83_07935) comGE 1624538..1624837 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3S83_RS07940 (E3S83_07940) comGD 1624824..1625270 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S83_RS07945 (E3S83_07945) comGC 1625248..1625559 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S83_RS07950 (E3S83_07950) comGB 1625573..1626643 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S83_RS07955 (E3S83_07955) comGA 1626615..1627589 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S83_RS07960 (E3S83_07960) - 1627614..1629260 (-) 1647 WP_000277718.1 IS1182 family transposase -
  E3S83_RS07965 (E3S83_07965) - 1629555..1630178 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=417640 E3S83_RS07940 WP_001788899.1 1624824..1625270(-) (comGD) [Staphylococcus aureus strain UP_620]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=417640 E3S83_RS07940 WP_001788899.1 1624824..1625270(-) (comGD) [Staphylococcus aureus strain UP_620]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment