Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PSTAB_RS04390 Genome accession   NC_015740
Coordinates   937567..938124 (-) Length   185 a.a.
NCBI ID   WP_013981876.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 932567..943124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSTAB_RS04380 (PSTAB_0872) - 936117..936722 (-) 606 WP_013981874.1 PilX N-terminal domain-containing pilus assembly protein -
  PSTAB_RS04385 (PSTAB_0873) - 936719..937570 (-) 852 WP_041771644.1 PilW family protein -
  PSTAB_RS04390 (PSTAB_0874) pilV 937567..938124 (-) 558 WP_013981876.1 type IV pilus modification protein PilV Machinery gene
  PSTAB_RS04395 (PSTAB_0875) - 938133..938624 (-) 492 WP_013981877.1 GspH/FimT family pseudopilin -
  PSTAB_RS04400 - 938792..939286 (-) 495 WP_041771646.1 GspH/FimT family pseudopilin -
  PSTAB_RS04405 (PSTAB_0876) thiO 939440..940537 (+) 1098 WP_013981878.1 glycine oxidase ThiO -
  PSTAB_RS04410 (PSTAB_0877) - 940686..941057 (+) 372 WP_013981879.1 translation initiation factor Sui1 -
  PSTAB_RS04415 (PSTAB_0878) speA 941180..943093 (+) 1914 WP_013981880.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20175.94 Da        Isoelectric Point: 4.6855

>NTDB_id=41739 PSTAB_RS04390 WP_013981876.1 937567..938124(-) (pilV) [Stutzerimonas stutzeri]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAILLSGDLIEIIRAHPKELFNTSPPKFPMNSGLKS
SSMFYKEAGSDFIDRESCVASPTRIAQTAKELRDCWADKVEAALPGGAELFDSDTYICRSSTPGNCDGQGSMLEIHMAWQ
VREGACLDSSNTDDTVCTYTVRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=41739 PSTAB_RS04390 WP_013981876.1 937567..938124(-) (pilV) [Stutzerimonas stutzeri]
ATGAAAACCAATAAAGGCTTCAGTCTGATCGAAGTGCTCGTAGCGCTACTGCTGACCACCATCGGAGTACTTGGAATGGT
GGCGCTGCAAGGCCGCAGCATCCAATACACCCAGGACTCCGTACAACGCAACACGGCCATTCTTCTGTCCGGAGACCTTA
TCGAAATCATACGGGCACACCCGAAAGAGCTTTTCAACACCTCCCCTCCAAAGTTCCCCATGAACAGCGGGTTAAAAAGC
AGCTCGATGTTCTACAAGGAGGCCGGAAGCGATTTCATTGATCGTGAAAGCTGCGTCGCTAGCCCGACCCGAATAGCGCA
GACAGCAAAAGAGTTGCGTGACTGCTGGGCGGACAAGGTGGAAGCAGCGCTACCTGGCGGAGCCGAGCTGTTCGACAGCG
ATACCTACATCTGCCGAAGCTCCACGCCGGGCAATTGCGACGGCCAAGGCTCGATGCTCGAGATTCATATGGCCTGGCAA
GTTCGAGAAGGCGCCTGTCTCGACTCGAGCAATACCGACGACACCGTCTGCACCTACACCGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.727

98.919

0.492

Multiple sequence alignment