Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   E3S96_RS13325 Genome accession   NZ_CP047828
Coordinates   2713249..2713965 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain UP_1073     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2708249..2718965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S96_RS13305 (E3S96_13305) - 2709341..2710291 (+) 951 WP_000790314.1 LacI family DNA-binding transcriptional regulator -
  E3S96_RS13310 (E3S96_13310) - 2710440..2711924 (+) 1485 WP_000141419.1 sucrose-6-phosphate hydrolase -
  E3S96_RS13315 (E3S96_13315) - 2711921..2712880 (+) 960 WP_001253295.1 carbohydrate kinase family protein -
  E3S96_RS13320 (E3S96_13320) - 2713070..2713177 (-) 108 WP_031785433.1 hypothetical protein -
  E3S96_RS13325 (E3S96_13325) agrA 2713249..2713965 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  E3S96_RS13330 (E3S96_13330) agrC 2713984..2715276 (-) 1293 WP_001657119.1 quorum-sensing sensor histidine kinase AgrC -
  E3S96_RS13335 (E3S96_13335) agrD 2715301..2715441 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  E3S96_RS13340 (E3S96_13340) agrB 2715438..2716007 (-) 570 WP_001105708.1 accessory gene regulator AgrB -
  E3S96_RS13825 hld 2716296..2716376 (+) 81 WP_000046022.1 delta-hemolysin -
  E3S96_RS13350 (E3S96_13350) - 2716977..2717762 (-) 786 WP_000867944.1 carbon-nitrogen family hydrolase -
  E3S96_RS13355 (E3S96_13355) - 2718123..2718749 (-) 627 WP_000522375.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=417368 E3S96_RS13325 WP_000688492.1 2713249..2713965(-) (agrA) [Staphylococcus aureus strain UP_1073]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=417368 E3S96_RS13325 WP_000688492.1 2713249..2713965(-) (agrA) [Staphylococcus aureus strain UP_1073]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAGGATGATCCAGCAGAATTAAGAACACGTATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCTGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACTAAGTCACACAGACTCATTGCGCATTTAGACAATCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGCTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATTG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment