Detailed information NTG0417359

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9207_RS05425
• Genome accession: NZ_CP060892
• Coordinates: 1119928..1120920 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC22
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1114928..1125920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9207_RS05395 (H9207_05345)	ispD	1114989..1115699 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H9207_RS05400 (H9207_05350)	ispF	1115699..1116178 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9207_RS05405 (H9207_05355)	truD	1116175..1117224 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H9207_RS05410 (H9207_05360)	surE	1117205..1117966 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H9207_RS05415 (H9207_05365)	pcm	1117960..1118586 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H9207_RS05420 (H9207_05370)	nlpD	1118771..1119865 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H9207_RS05425 (H9207_05375)	rpoS	1119928..1120920 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H9207_RS05430 (H9207_05380)	ygbN	1121014..1122378 (-)	1365	WP_000104441.1	GntP family transporter	-
H9207_RS05435 (H9207_05385)	ygbM	1122467..1123243 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
H9207_RS05440 (H9207_05390)	ygbL	1123248..1123886 (-)	639	WP_001278994.1	aldolase	-
H9207_RS05445 (H9207_05395)	otnK	1123883..1125145 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=417359 H9207_RS05425 WP_000081550.1 1119928..1120920(+) (rpoS) [Escherichia coli strain EC22]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=417359 H9207_RS05425 WP_000081550.1 1119928..1120920(+) (rpoS) [Escherichia coli strain EC22]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715