Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   E3T01_RS13295 Genome accession   NZ_CP047826
Coordinates   2708219..2708935 (-) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain UP_1239     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703219..2713935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T01_RS13275 (E3T01_13275) - 2704311..2705261 (+) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -
  E3T01_RS13280 (E3T01_13280) - 2705410..2706894 (+) 1485 WP_000141416.1 sucrose-6-phosphate hydrolase -
  E3T01_RS13285 (E3T01_13285) - 2706891..2707850 (+) 960 WP_001253310.1 carbohydrate kinase family protein -
  E3T01_RS13290 (E3T01_13290) - 2708038..2708147 (-) 110 Protein_2570 hypothetical protein -
  E3T01_RS13295 (E3T01_13295) agrA 2708219..2708935 (-) 717 WP_000688498.1 quorum-sensing response regulator AgrA Regulator
  E3T01_RS13300 (E3T01_13300) agrC 2708954..2710246 (-) 1293 WP_001789596.1 quorum-sensing sensor histidine kinase AgrC -
  E3T01_RS13305 (E3T01_13305) agrD 2710271..2710411 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  E3T01_RS13310 (E3T01_13310) agrB 2710408..2710977 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  E3T01_RS13815 hld 2711267..2711347 (+) 81 WP_000046022.1 delta-hemolysin -
  E3T01_RS13320 (E3T01_13320) - 2711944..2712729 (-) 786 WP_000867940.1 carbon-nitrogen family hydrolase -
  E3T01_RS13325 (E3T01_13325) - 2713090..2713716 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=417325 E3T01_RS13295 WP_000688498.1 2708219..2708935(-) (agrA) [Staphylococcus aureus strain UP_1239]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=417325 E3T01_RS13295 WP_000688498.1 2708219..2708935(-) (agrA) [Staphylococcus aureus strain UP_1239]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGTTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment