Detailed information NTG0041726

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECDH1ME8569_RS14090
• Genome accession: NC_017638
• Coordinates: 2844467..2845459 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081587.1
• Uniprot ID: -
• Organism: Escherichia coli DH1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2839467..2850459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECDH1ME8569_RS14070 (ECDH1ME8569_2647)	otnK	2840243..2841409 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ECDH1ME8569_RS14075 (ECDH1ME8569_2648)	ygbL	2841501..2842139 (+)	639	WP_001278994.1	aldolase	-
ECDH1ME8569_RS14080 (ECDH1ME8569_2649)	ygbM	2842144..2842920 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ECDH1ME8569_RS14085 (ECDH1ME8569_2650)	ygbN	2843009..2844373 (+)	1365	WP_000104441.1	GntP family transporter	-
ECDH1ME8569_RS14090 (ECDH1ME8569_2651)	rpoS	2844467..2845459 (-)	993	WP_000081587.1	RNA polymerase sigma factor RpoS	Regulator
ECDH1ME8569_RS14095 (ECDH1ME8569_2652)	nlpD	2845522..2846616 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ECDH1ME8569_RS14100 (ECDH1ME8569_2653)	pcm	2846801..2847427 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECDH1ME8569_RS14105 (ECDH1ME8569_2654)	surE	2847421..2848182 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECDH1ME8569_RS14110 (ECDH1ME8569_2655)	truD	2848163..2849212 (-)	1050	WP_000568970.1	tRNA pseudouridine(13) synthase TruD	-
ECDH1ME8569_RS14115 (ECDH1ME8569_2656)	ispF	2849209..2849688 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECDH1ME8569_RS14120 (ECDH1ME8569_2657)	ispD	2849688..2850398 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37944.83 Da
• Isoelectric Point: 4.5886

>NTDB_id=41726 ECDH1ME8569_RS14090 WP_000081587.1 2844467..2845459(-) (rpoS) [Escherichia coli DH1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVELEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLTRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=41726 ECDH1ME8569_RS14090 WP_000081587.1 2844467..2845459(-) (rpoS) [Escherichia coli DH1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACTGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGACCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712