Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3T05_RS02415 Genome accession   NZ_CP047820
Coordinates   455474..455920 (+) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1395     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450474..460920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T05_RS02380 - 450968..451171 (+) 204 WP_000087561.1 YqgQ family protein -
  E3T05_RS02385 - 451168..452154 (+) 987 WP_000161314.1 ROK family glucokinase -
  E3T05_RS02390 - 452154..452483 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3T05_RS02395 - 452480..453103 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3T05_RS02400 comGA 453155..454129 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  E3T05_RS02405 comGB 454101..455171 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3T05_RS02410 comGC 455185..455496 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E3T05_RS02415 comGD 455474..455920 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3T05_RS02420 comGE 455907..456206 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3T05_RS02425 comGF 456124..456621 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3T05_RS02430 - 456718..456864 (+) 147 WP_001789879.1 hypothetical protein -
  E3T05_RS02435 - 456854..457378 (+) 525 WP_001015117.1 shikimate kinase -
  E3T05_RS02440 gcvT 457537..458628 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  E3T05_RS02445 gcvPA 458648..459994 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=417218 E3T05_RS02415 WP_001790850.1 455474..455920(+) (comGD) [Staphylococcus aureus strain UP_1395]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=417218 E3T05_RS02415 WP_001790850.1 455474..455920(+) (comGD) [Staphylococcus aureus strain UP_1395]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment