Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9209_RS08870 Genome accession   NZ_CP060880
Coordinates   1860672..1862099 (-) Length   475 a.a.
NCBI ID   WP_000980567.1    Uniprot ID   -
Organism   Escherichia coli strain EC26     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1855672..1867099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9209_RS08840 (H9209_08765) yeeZ 1855727..1856551 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  H9209_RS08845 (H9209_08770) yeeY 1856597..1857526 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H9209_RS08850 (H9209_08775) yoeI 1857741..1857803 (+) 63 WP_010723108.1 membrane protein YoeI -
  H9209_RS08855 (H9209_08780) plaP 1857793..1859151 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H9209_RS08860 (H9209_08785) tsuA 1859330..1860388 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  H9209_RS08865 (H9209_08790) tsuB 1860402..1860629 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H9209_RS08870 (H9209_08795) sbcB 1860672..1862099 (-) 1428 WP_000980567.1 exodeoxyribonuclease I Machinery gene
  H9209_RS08875 (H9209_08800) dacD 1862308..1863474 (+) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H9209_RS08880 (H9209_08805) sbmC 1863593..1864066 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  H9209_RS08885 (H9209_08810) yeeA 1864264..1865322 (+) 1059 WP_001200905.1 FUSC family protein -
  H9209_RS08890 (H9209_08815) tmaR 1865494..1865823 (+) 330 WP_000450409.1 DUF496 family protein -
  H9209_RS08895 (H9209_08820) - 1865924..1866106 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H9209_RS08900 (H9209_08825) - 1866160..1866306 (+) 147 Protein_1743 transposase domain-containing protein -
  H9209_RS08905 (H9209_08830) - 1866595..1866675 (-) 81 Protein_1744 hypothetical protein -
  H9209_RS08910 (H9209_08835) yeeW 1866721..1866915 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54503.77 Da        Isoelectric Point: 5.4720

>NTDB_id=417208 H9209_RS08870 WP_000980567.1 1860672..1862099(-) (sbcB) [Escherichia coli strain EC26]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=417208 H9209_RS08870 WP_000980567.1 1860672..1862099(-) (sbcB) [Escherichia coli strain EC26]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAACAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGATCTTCACGTCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581