Detailed information NTG0417195

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9209_RS05235
• Genome accession: NZ_CP060880
• Coordinates: 1075208..1076200 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC26
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1070208..1081200

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9209_RS05205 (H9209_05140)	ispD	1070269..1070979 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H9209_RS05210 (H9209_05145)	ispF	1070979..1071458 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9209_RS05215 (H9209_05150)	truD	1071455..1072504 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H9209_RS05220 (H9209_05155)	surE	1072485..1073246 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H9209_RS05225 (H9209_05160)	pcm	1073240..1073866 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H9209_RS05230 (H9209_05165)	nlpD	1074051..1075145 (+)	1095	WP_306433997.1	murein hydrolase activator NlpD	-
H9209_RS05235 (H9209_05170)	rpoS	1075208..1076200 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H9209_RS05240 (H9209_05175)	ygbN	1076294..1077658 (-)	1365	WP_000104441.1	GntP family transporter	-
H9209_RS05245 (H9209_05180)	ygbM	1077747..1078523 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
H9209_RS05250 (H9209_05185)	ygbL	1078528..1079166 (-)	639	WP_001278994.1	aldolase	-
H9209_RS05255 (H9209_05190)	otnK	1079163..1080425 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=417195 H9209_RS05235 WP_000081550.1 1075208..1076200(+) (rpoS) [Escherichia coli strain EC26]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=417195 H9209_RS05235 WP_000081550.1 1075208..1076200(+) (rpoS) [Escherichia coli strain EC26]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715