Detailed information NTG0417062

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9211_RS17200
• Genome accession: NZ_CP060867
• Coordinates: 3555170..3556162 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC29
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3550170..3561162

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9211_RS17180 (H9211_17025)	otnK	3550945..3552207 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
H9211_RS17185 (H9211_17030)	ygbL	3552204..3552842 (+)	639	WP_001278994.1	aldolase	-
H9211_RS17190 (H9211_17035)	ygbM	3552847..3553623 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
H9211_RS17195 (H9211_17040)	ygbN	3553712..3555076 (+)	1365	WP_000104441.1	GntP family transporter	-
H9211_RS17200 (H9211_17045)	rpoS	3555170..3556162 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H9211_RS17205 (H9211_17050)	nlpD	3556225..3557319 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H9211_RS17210 (H9211_17055)	pcm	3557504..3558130 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H9211_RS17215 (H9211_17060)	surE	3558124..3558885 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H9211_RS17220 (H9211_17065)	truD	3558866..3559915 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H9211_RS17225 (H9211_17070)	ispF	3559912..3560391 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9211_RS17230 (H9211_17075)	ispD	3560391..3561101 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=417062 H9211_RS17200 WP_000081550.1 3555170..3556162(-) (rpoS) [Escherichia coli strain EC29]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=417062 H9211_RS17200 WP_000081550.1 3555170..3556162(-) (rpoS) [Escherichia coli strain EC29]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715