Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9211_RS13525 Genome accession   NZ_CP060867
Coordinates   2775222..2776649 (+) Length   475 a.a.
NCBI ID   WP_073849938.1    Uniprot ID   -
Organism   Escherichia coli strain EC29     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2770222..2781649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9211_RS13495 - 2770373..2770762 (+) 390 WP_001445118.1 IS110 family transposase -
  H9211_RS13500 - 2771033..2771398 (+) 366 WP_223350516.1 EutP/PduV family microcompartment system protein -
  H9211_RS13505 (H9211_13375) tmaR 2771499..2771828 (-) 330 WP_000450409.1 DUF496 family protein -
  H9211_RS13510 (H9211_13380) yeeA 2772000..2773058 (-) 1059 WP_001200892.1 FUSC family protein -
  H9211_RS13515 (H9211_13385) sbmC 2773256..2773729 (-) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  H9211_RS13520 (H9211_13390) dacD 2773847..2775013 (-) 1167 Protein_2653 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H9211_RS13525 (H9211_13395) sbcB 2775222..2776649 (+) 1428 WP_073849938.1 exodeoxyribonuclease I Machinery gene
  H9211_RS13530 (H9211_13400) tsuB 2776692..2776919 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H9211_RS13535 (H9211_13405) tsuA 2776933..2777991 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  H9211_RS13540 (H9211_13410) plaP 2778170..2779528 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H9211_RS13545 (H9211_13415) yoeI 2779518..2779580 (-) 63 WP_010723108.1 membrane protein YoeI -
  H9211_RS13550 (H9211_13420) yeeY 2779795..2780724 (-) 930 WP_087760827.1 LysR substrate-binding domain-containing protein -
  H9211_RS13555 (H9211_13425) yeeZ 2780770..2781594 (-) 825 WP_000754762.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54470.79 Da        Isoelectric Point: 5.4720

>NTDB_id=417049 H9211_RS13525 WP_073849938.1 2775222..2776649(+) (sbcB) [Escherichia coli strain EC29]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=417049 H9211_RS13525 WP_073849938.1 2775222..2776649(+) (sbcB) [Escherichia coli strain EC29]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment