Detailed information NTG0417028

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: E3T14_RS09860
• Genome accession: NZ_CP047809
• Coordinates: 1971760..1973388 (-)
• Length: 542 a.a.
• NCBI ID: WP_061657937.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain UP_1591
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	1971760..1974758	1971760..1973388	within	0

Gene organization within MGE regions

Location: 1971760..1974758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3T14_RS09860 (E3T14_09875)	ccrB	1971760..1973388 (-)	1629	WP_061657937.1	recombinase family protein	Machinery gene
E3T14_RS09865 (E3T14_09880)	ccrA	1973409..1974758 (-)	1350	WP_161575730.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62589.53 Da
• Isoelectric Point: 9.7287

>NTDB_id=417028 E3T14_RS09860 WP_061657937.1 1971760..1973388(-) (ccrB) [Staphylococcus aureus strain UP_1591]
MQQLKQKRVAIYVRVSTEIQSTEGYSITGQINQIEEYCQFNNFKVVDVYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANTLNHKGYVTKKGKPFSISSITYILSNPFYMGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHAPIISQALWDKVQARKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVIERVNQDNQVDVAALNHDIAYKQQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIEFMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide

• Length: 1629 bp

>NTDB_id=417028 E3T14_RS09860 WP_061657937.1 1971760..1973388(-) (ccrB) [Staphylococcus aureus strain UP_1591]
ATGCAACAACTCAAACAAAAACGTGTCGCTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTGTACGCAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGTCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGACTGGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAGCAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACTTCTTCTGGAAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTTGAACGTAATAACATTGTCGAGAACGTATTCATGGGCCAAACCAGACGTGCCCAAGAAGGCTATTATCAAGGAAAT
TTACCGCTAGGCTATGACAAAATACCCGACAGTAAACACGAATTGATGATTAATCAACATGAAGCTAATATTGTAAAATA
TATTTTCGAATCTTATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATACACTCAATCATAAAGGCTATGTCACTAAAA
AAGGGAAGCCTTTCAGTATAAGTTCTATTACTTATATTCTATCCAATCCCTTCTATATGGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAACGTCGTAAAGGACTGAATGATAAACCGATCATAGCTGAGGGTAAGCACGCCCCTATTAT
TAGCCAAGCATTATGGGATAAAGTGCAAGCACGTAAAAAGCAAGTCAGTCAAAAACCCCAAGTTCACGGTAAAGGAACTA
ATCTATTAACCGGTATCGTTCATTGTCCCCAATGCGGAGCACCTATGGCCGCGAGTAATACTACTAATACACTCAAAGAT
GGAACAAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTA
TCGAACGTGTTAATCAAGATAATCAAGTCGATGTAGCTGCACTCAATCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATTCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterproScan.

• Recombinase (Recombinase) (180-280)

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-356)

• Resolvase, N terminal domain (Resolvase) (9-156)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	85.978	100	0.86