Detailed information NTG0416955

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IAI02_RS05440
• Genome accession: NZ_CP060748
• Coordinates: 1127782..1128774 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC96
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1122782..1133774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAI02_RS05410 (IAI02_05410)	ispD	1122843..1123553 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IAI02_RS05415 (IAI02_05415)	ispF	1123553..1124032 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IAI02_RS05420 (IAI02_05420)	truD	1124029..1125078 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
IAI02_RS05425 (IAI02_05425)	surE	1125059..1125820 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IAI02_RS05430 (IAI02_05430)	pcm	1125814..1126440 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IAI02_RS05435 (IAI02_05435)	nlpD	1126625..1127719 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IAI02_RS05440 (IAI02_05440)	rpoS	1127782..1128774 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IAI02_RS05445 (IAI02_05445)	ygbN	1128868..1130232 (-)	1365	WP_000104441.1	GntP family transporter	-
IAI02_RS05450 (IAI02_05450)	ygbM	1130321..1131097 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
IAI02_RS05455 (IAI02_05455)	ygbL	1131102..1131740 (-)	639	WP_001278994.1	aldolase	-
IAI02_RS05460 (IAI02_05460)	otnK	1131737..1132999 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=416955 IAI02_RS05440 WP_000081550.1 1127782..1128774(+) (rpoS) [Escherichia coli strain EC96]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=416955 IAI02_RS05440 WP_000081550.1 1127782..1128774(+) (rpoS) [Escherichia coli strain EC96]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715