Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   E3S67_RS06375 Genome accession   NZ_CP047802
Coordinates   1284320..1285294 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain UP_1442     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279320..1290294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S67_RS06335 (E3S67_06335) gcvT 1279821..1280912 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S67_RS06340 (E3S67_06340) - 1281071..1281595 (-) 525 WP_001015120.1 shikimate kinase -
  E3S67_RS06345 (E3S67_06345) - 1281585..1281731 (-) 147 WP_001792109.1 hypothetical protein -
  E3S67_RS06350 (E3S67_06350) comGF 1281828..1282325 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S67_RS06355 (E3S67_06355) comGE 1282243..1282542 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  E3S67_RS06360 (E3S67_06360) comGD 1282529..1282975 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S67_RS06365 (E3S67_06365) comGC 1282953..1283264 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S67_RS06370 (E3S67_06370) comGB 1283278..1284348 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S67_RS06375 (E3S67_06375) comGA 1284320..1285294 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S67_RS06380 (E3S67_06380) - 1285346..1285969 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3S67_RS06385 (E3S67_06385) - 1285966..1286295 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S67_RS06390 (E3S67_06390) - 1286295..1287281 (-) 987 WP_000161311.1 ROK family glucokinase -
  E3S67_RS06395 (E3S67_06395) - 1287278..1287481 (-) 204 WP_000087561.1 YqgQ family protein -
  E3S67_RS06400 (E3S67_06400) - 1287462..1288925 (-) 1464 WP_001017852.1 rhomboid family protein -
  E3S67_RS06405 (E3S67_06405) - 1288937..1289476 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  E3S67_RS06410 (E3S67_06410) rpmG 1289685..1289834 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=416797 E3S67_RS06375 WP_000697220.1 1284320..1285294(-) (comGA) [Staphylococcus aureus strain UP_1442]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=416797 E3S67_RS06375 WP_000697220.1 1284320..1285294(-) (comGA) [Staphylococcus aureus strain UP_1442]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment