Detailed information NTG0416737

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9446_RS13930
• Genome accession: NZ_CP060708
• Coordinates: 2851290..2852282 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain MFDpir
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2846290..2857282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9446_RS13910 (H9446_13910)	otnK	2847066..2848232 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
H9446_RS13915 (H9446_13915)	ygbL	2848324..2848962 (+)	639	WP_001278994.1	aldolase	-
H9446_RS13920 (H9446_13920)	ygbM	2848967..2849743 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
H9446_RS13925 (H9446_13925)	ygbN	2849832..2851196 (+)	1365	WP_000104441.1	GntP family transporter	-
H9446_RS13930 (H9446_13930)	rpoS	2851290..2852282 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
H9446_RS13935 (H9446_13935)	nlpD	2852345..2853439 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H9446_RS13940 (H9446_13940)	pcm	2853624..2854250 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H9446_RS13945 (H9446_13945)	surE	2854244..2855005 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H9446_RS13950 (H9446_13950)	truD	2854986..2856035 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H9446_RS13955 (H9446_13955)	ispF	2856032..2856511 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9446_RS13960 (H9446_13960)	ispD	2856511..2857221 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=416737 H9446_RS13930 WP_000081588.1 2851290..2852282(-) (rpoS) [Escherichia coli strain MFDpir]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=416737 H9446_RS13930 WP_000081588.1 2851290..2852282(-) (rpoS) [Escherichia coli strain MFDpir]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715