Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PPS_RS07890 Genome accession   NC_015733
Coordinates   1703324..1703959 (+) Length   211 a.a.
NCBI ID   WP_003259970.1    Uniprot ID   V9UW47
Organism   Pseudomonas putida S16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698324..1708959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPS_RS07870 (PPS_1527) - 1698525..1699457 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  PPS_RS07875 (PPS_1528) - 1699454..1700233 (+) 780 WP_003260104.1 ABC transporter permease -
  PPS_RS07880 (PPS_1529) - 1700261..1700749 (-) 489 Protein_1550 DUF2062 domain-containing protein -
  PPS_RS07885 (PPS_1530) comA 1700892..1703105 (+) 2214 WP_044047228.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PPS_RS07890 (PPS_1531) exbB 1703324..1703959 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PPS_RS07895 (PPS_1532) - 1703956..1704390 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  PPS_RS07900 (PPS_1533) lpxK 1704390..1705391 (+) 1002 WP_013971565.1 tetraacyldisaccharide 4'-kinase -
  PPS_RS07905 (PPS_1534) - 1705436..1705621 (+) 186 WP_011532874.1 Trm112 family protein -
  PPS_RS07910 (PPS_1535) kdsB 1705618..1706382 (+) 765 WP_013971566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PPS_RS07915 (PPS_1536) - 1706382..1706846 (+) 465 WP_013971567.1 low molecular weight protein-tyrosine-phosphatase -
  PPS_RS07920 (PPS_1537) murB 1706843..1707862 (+) 1020 WP_044046919.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=41672 PPS_RS07890 WP_003259970.1 1703324..1703959(+) (exbB) [Pseudomonas putida S16]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRVSRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=41672 PPS_RS07890 WP_003259970.1 1703324..1703959(+) (exbB) [Pseudomonas putida S16]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGTCAGTCGCGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGATATGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCTGATTCGCCATTGGGCGAAATCCTTGCCGCCGGCCTGGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCTGCGCCGTATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9UW47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment