Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   H7786_RS04990 Genome accession   NZ_CP060649
Coordinates   987777..988847 (-) Length   356 a.a.
NCBI ID   WP_030125920.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 982777..993847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7786_RS04970 (H7786_05035) citX 983357..983935 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  H7786_RS04975 (H7786_05040) - 983950..985344 (+) 1395 WP_228646570.1 oxaloacetate decarboxylase subunit alpha -
  H7786_RS04980 (H7786_05045) citC 985454..986506 (-) 1053 WP_030125921.1 [citrate (pro-3S)-lyase] ligase -
  H7786_RS04985 (H7786_05050) - 986595..987077 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  H7786_RS04990 (H7786_05055) xerS 987777..988847 (-) 1071 WP_030125920.1 tyrosine recombinase XerS Machinery gene
  H7786_RS04995 (H7786_05060) - 989322..990020 (+) 699 WP_002993300.1 XRE family transcriptional regulator -
  H7786_RS05000 (H7786_05065) ffh 990137..991654 (-) 1518 WP_030125919.1 signal recognition particle protein -
  H7786_RS05005 (H7786_05070) - 991669..992001 (-) 333 WP_002989745.1 putative DNA-binding protein -
  H7786_RS05010 (H7786_05075) - 992099..992797 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41457.54 Da        Isoelectric Point: 9.5552

>NTDB_id=416550 H7786_RS04990 WP_030125920.1 987777..988847(-) (xerS) [Streptococcus pyogenes strain TSPY270]
MRRELLLEKIEAYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLSVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=416550 H7786_RS04990 WP_030125920.1 987777..988847(-) (xerS) [Streptococcus pyogenes strain TSPY270]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAGCCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTATCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTGGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803

Multiple sequence alignment