Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E3S87_RS08440 Genome accession   NZ_CP047793
Coordinates   1699497..1700000 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain UP_764     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1680378..1700000 1699497..1700000 within 0


Gene organization within MGE regions


Location: 1680378..1700000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S87_RS08305 (E3S87_08305) - 1680378..1680641 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  E3S87_RS08310 (E3S87_08310) - 1680779..1681351 (-) 573 WP_000769723.1 PepSY domain-containing protein -
  E3S87_RS08315 (E3S87_08315) - 1681532..1681900 (-) 369 WP_000849155.1 YxeA family protein -
  E3S87_RS08320 (E3S87_08320) - 1682137..1682851 (+) 715 Protein_1602 tyrosine-type recombinase/integrase -
  E3S87_RS08325 (E3S87_08325) - 1682857..1683864 (+) 1008 WP_001080636.1 Abi family protein -
  E3S87_RS14000 - 1684628..1684807 (-) 180 WP_000797954.1 hypothetical protein -
  E3S87_RS08330 (E3S87_08330) - 1684823..1685335 (-) 513 WP_000813311.1 hypothetical protein -
  E3S87_RS08335 (E3S87_08335) - 1685453..1685854 (-) 402 WP_000683457.1 hypothetical protein -
  E3S87_RS08340 (E3S87_08340) - 1686032..1687000 (-) 969 WP_000801980.1 Abi family protein -
  E3S87_RS08345 (E3S87_08345) - 1687277..1687846 (-) 570 WP_001293071.1 terminase small subunit -
  E3S87_RS08350 (E3S87_08350) - 1687843..1688055 (-) 213 WP_001656917.1 hypothetical protein -
  E3S87_RS08355 (E3S87_08355) - 1688187..1688714 (-) 528 WP_000771361.1 spore coat protein -
  E3S87_RS08360 (E3S87_08360) - 1688767..1689420 (-) 654 WP_000214170.1 hypothetical protein -
  E3S87_RS08365 (E3S87_08365) - 1689451..1689795 (-) 345 WP_001288442.1 hypothetical protein -
  E3S87_RS08370 (E3S87_08370) - 1690503..1691144 (-) 642 WP_001019762.1 hypothetical protein -
  E3S87_RS08375 (E3S87_08375) - 1691141..1691521 (-) 381 WP_000356942.1 hypothetical protein -
  E3S87_RS08380 (E3S87_08380) - 1691831..1693540 (-) 1710 WP_160175467.1 DUF927 domain-containing protein -
  E3S87_RS08385 (E3S87_08385) - 1693554..1694423 (-) 870 WP_001002709.1 primase alpha helix C-terminal domain-containing protein -
  E3S87_RS08390 (E3S87_08390) tscT 1694488..1694814 (-) 327 WP_001103967.1 type II toxin-antitoxin system toxin TscT -
  E3S87_RS08395 (E3S87_08395) - 1694815..1695198 (-) 384 WP_000403837.1 hypothetical protein -
  E3S87_RS08400 (E3S87_08400) - 1695200..1695403 (-) 204 WP_001231376.1 hypothetical protein -
  E3S87_RS08405 (E3S87_08405) - 1695370..1695543 (-) 174 WP_000784892.1 hypothetical protein -
  E3S87_RS08410 (E3S87_08410) - 1695555..1695827 (-) 273 WP_001138305.1 helix-turn-helix domain-containing protein -
  E3S87_RS08415 (E3S87_08415) - 1695828..1695992 (-) 165 WP_001611932.1 helix-turn-helix domain-containing protein -
  E3S87_RS08420 (E3S87_08420) - 1696141..1696764 (+) 624 WP_000230361.1 helix-turn-helix domain-containing protein -
  E3S87_RS08425 (E3S87_08425) - 1696925..1698139 (+) 1215 WP_000270135.1 tyrosine-type recombinase/integrase -
  E3S87_RS08430 (E3S87_08430) - 1698252..1698971 (+) 720 WP_000400841.1 type II toxin-antitoxin system PemK/MazF family toxin -
  E3S87_RS08435 (E3S87_08435) rpsR 1699203..1699445 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  E3S87_RS08440 (E3S87_08440) ssbA 1699497..1700000 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=416436 E3S87_RS08440 WP_000934799.1 1699497..1700000(-) (ssbA) [Staphylococcus aureus strain UP_764]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=416436 E3S87_RS08440 WP_000934799.1 1699497..1700000(-) (ssbA) [Staphylococcus aureus strain UP_764]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment