Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NIT79A3_RS01710 Genome accession   NC_015731
Coordinates   381633..382601 (-) Length   322 a.a.
NCBI ID   WP_348225687.1    Uniprot ID   -
Organism   Nitrosomonas sp. Is79A3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376633..387601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIT79A3_RS01685 (Nit79A3_0345) - 377572..378789 (-) 1218 WP_013964533.1 integrase arm-type DNA-binding domain-containing protein -
  NIT79A3_RS01695 (Nit79A3_0346) rpoH 379089..379934 (-) 846 WP_013964534.1 RNA polymerase sigma factor RpoH -
  NIT79A3_RS01700 (Nit79A3_0347) ftsX 380047..380958 (-) 912 WP_013964535.1 permease-like cell division protein FtsX -
  NIT79A3_RS01705 (Nit79A3_0348) ftsE 380955..381608 (-) 654 WP_013964536.1 cell division ATP-binding protein FtsE -
  NIT79A3_RS01710 (Nit79A3_0349) pilA 381633..382601 (-) 969 WP_348225687.1 signal recognition particle-docking protein FtsY Machinery gene
  NIT79A3_RS01715 (Nit79A3_0350) - 382735..384138 (+) 1404 WP_013964538.1 pitrilysin family protein -
  NIT79A3_RS01720 (Nit79A3_0351) - 384234..384617 (-) 384 WP_013964539.1 EF-hand domain-containing protein -
  NIT79A3_RS01725 (Nit79A3_0352) orn 384755..385300 (-) 546 WP_041360058.1 oligoribonuclease -
  NIT79A3_RS01730 (Nit79A3_0353) - 385456..386712 (+) 1257 WP_013964541.1 M48 family metallopeptidase -
  NIT79A3_RS01735 (Nit79A3_0354) - 386709..387050 (+) 342 WP_013964542.1 4a-hydroxytetrahydrobiopterin dehydratase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34759.86 Da        Isoelectric Point: 5.2684

>NTDB_id=41639 NIT79A3_RS01710 WP_348225687.1 381633..382601(-) (pilA) [Nitrosomonas sp. Is79A3]
MPDTESESKPDESVSLASKLKQGLSRTRQNLGKQLSNLFGGGKIDEALYEELETILLTSDIGVNATHQLLEDLRKQVRRD
ALTDSMQLKQALKESLIAMLEPLVQPFDTTIQKPFVIMITGVNGVGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQ
LIVWGERNNITVIAPDSDPAKKSDPAAVIFDAVNSAKARGIDIVLADTAGRLTTQLHLMEEIRKVKRVIAKAMPDAPHEV
LLVLDANTGQNAVTQVKAFDEALNVTGLVLTKLDGTAKGGVVAAIAGQYPQNPPALRFVGVGEGLDDLRPFDAREFVEAM
FD

Nucleotide


Download         Length: 969 bp        

>NTDB_id=41639 NIT79A3_RS01710 WP_348225687.1 381633..382601(-) (pilA) [Nitrosomonas sp. Is79A3]
ATGCCTGACACTGAGTCTGAATCCAAACCTGATGAATCAGTGAGCTTAGCAAGCAAGCTCAAACAAGGCCTTTCGCGCAC
CCGGCAGAATTTGGGTAAACAACTATCAAATCTATTCGGTGGCGGCAAGATAGATGAGGCGCTTTATGAAGAACTGGAAA
CTATTTTGTTAACCTCCGACATTGGGGTTAACGCAACCCATCAATTACTTGAAGATCTGCGCAAACAAGTGAGGCGCGAC
GCATTAACGGATTCCATGCAATTAAAACAAGCACTTAAGGAATCCCTCATCGCTATGCTGGAACCGCTTGTTCAACCATT
TGACACCACGATACAAAAACCTTTTGTCATTATGATAACAGGTGTCAATGGCGTGGGAAAAACAACTTCGATTGGTAAAC
TAGCCAAATATTTTCAATCACAAGGCAAATCGGTATTGCTGGCCGCCGGTGATACTTTCCGCGCAGCGGCACGCGAACAA
CTGATTGTATGGGGCGAACGGAACAATATCACCGTGATCGCACCGGATAGTGATCCAGCTAAAAAAAGTGACCCGGCAGC
AGTGATTTTTGATGCGGTCAATTCGGCCAAAGCACGGGGTATCGATATTGTGCTGGCAGACACCGCCGGACGTTTGACCA
CGCAATTGCATTTAATGGAAGAGATTAGAAAAGTAAAACGTGTGATAGCCAAAGCGATGCCAGATGCACCACACGAAGTA
TTGCTGGTTCTGGATGCCAATACCGGGCAGAATGCAGTTACACAGGTTAAAGCCTTTGATGAAGCACTGAATGTAACCGG
TTTAGTTCTGACCAAACTGGATGGTACCGCCAAAGGCGGGGTGGTAGCAGCCATTGCCGGGCAATATCCACAGAATCCCC
CGGCATTGCGTTTTGTTGGTGTTGGTGAAGGATTGGATGATTTAAGACCATTTGACGCCAGAGAGTTTGTCGAAGCGATG
TTTGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(31-96)

SRP54-type protein, GTPase domain (SRP54)

(114-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

61.981

97.205

0.602

Multiple sequence alignment