Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H7789_RS02490 Genome accession   NZ_CP060646
Coordinates   491270..491878 (-) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain TSPY1026     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 486270..496878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7789_RS02475 (H7789_02480) nadE 486305..487129 (+) 825 WP_228628271.1 ammonia-dependent NAD(+) synthetase -
  H7789_RS02480 (H7789_02485) pepC 487314..488651 (+) 1338 WP_002988925.1 aminopeptidase C -
  H7789_RS02485 (H7789_02490) pbp1a 489118..491283 (-) 2166 WP_030126345.1 penicillin-binding protein PBP1A -
  H7789_RS02490 (H7789_02495) recU 491270..491878 (-) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  H7789_RS02495 (H7789_02500) - 491959..492474 (+) 516 WP_023611633.1 DUF1273 domain-containing protein -
  H7789_RS02500 (H7789_02505) gpsB 492596..492922 (+) 327 WP_002983626.1 cell division regulator GpsB -
  H7789_RS02510 (H7789_02515) - 493367..494521 (+) 1155 WP_023079247.1 class I SAM-dependent RNA methyltransferase -
  H7789_RS02515 (H7789_02520) - 494535..496004 (+) 1470 WP_136277969.1 cell division site-positioning protein MapZ family protein -
  H7789_RS02520 (H7789_02525) - 496148..496630 (-) 483 WP_002988938.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=416253 H7789_RS02490 WP_002983622.1 491270..491878(-) (recU) [Streptococcus pyogenes strain TSPY1026]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=416253 H7789_RS02490 WP_002983622.1 491270..491878(-) (recU) [Streptococcus pyogenes strain TSPY1026]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5