Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3S93_RS02420 Genome accession   NZ_CP047789
Coordinates   453803..454249 (+) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_967     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448803..459249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S93_RS02385 (E3S93_02385) - 449297..449500 (+) 204 WP_000087561.1 YqgQ family protein -
  E3S93_RS02390 (E3S93_02390) - 449497..450483 (+) 987 WP_000161314.1 ROK family glucokinase -
  E3S93_RS02395 (E3S93_02395) - 450483..450812 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S93_RS02400 (E3S93_02400) - 450809..451432 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3S93_RS02405 (E3S93_02405) comGA 451484..452458 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S93_RS02410 (E3S93_02410) comGB 452430..453500 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S93_RS02415 (E3S93_02415) comGC 453514..453825 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S93_RS02420 (E3S93_02420) comGD 453803..454249 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S93_RS02425 (E3S93_02425) comGE 454236..454535 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3S93_RS02430 (E3S93_02430) comGF 454453..454950 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S93_RS02435 (E3S93_02435) - 455047..455193 (+) 147 WP_001789879.1 hypothetical protein -
  E3S93_RS02440 (E3S93_02440) - 455183..455707 (+) 525 WP_001015117.1 shikimate kinase -
  E3S93_RS02445 (E3S93_02445) gcvT 455866..456957 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S93_RS02450 (E3S93_02450) gcvPA 456977..458323 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=416247 E3S93_RS02420 WP_001790850.1 453803..454249(+) (comGD) [Staphylococcus aureus strain UP_967]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=416247 E3S93_RS02420 WP_001790850.1 453803..454249(+) (comGD) [Staphylococcus aureus strain UP_967]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment