Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H7789_RS00250 Genome accession   NZ_CP060646
Coordinates   33482..34237 (+) Length   251 a.a.
NCBI ID   WP_136048815.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28482..39237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7789_RS09330 (H7789_00240) - 29827..30108 (-) 282 WP_136097620.1 transposase -
  H7789_RS00240 (H7789_00245) pcsB 30855..32051 (+) 1197 WP_020833179.1 peptidoglycan hydrolase PcsB -
  H7789_RS00245 (H7789_00250) - 32304..33266 (+) 963 WP_136076948.1 ribose-phosphate diphosphokinase -
  H7789_RS00250 (H7789_00255) recO 33482..34237 (+) 756 WP_136048815.1 DNA repair protein RecO Machinery gene
  H7789_RS00255 (H7789_00260) plsX 34340..35347 (+) 1008 WP_023079035.1 phosphate acyltransferase PlsX -
  H7789_RS00260 (H7789_00265) - 35340..35582 (+) 243 WP_002986713.1 phosphopantetheine-binding protein -
  H7789_RS00265 (H7789_00270) purC 35734..36438 (+) 705 WP_017649245.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29543.05 Da        Isoelectric Point: 6.9077

>NTDB_id=416219 H7789_RS00250 WP_136048815.1 33482..34237(+) (recO) [Streptococcus pyogenes strain TSPY1026]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDLHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=416219 H7789_RS00250 WP_136048815.1 33482..34237(+) (recO) [Streptococcus pyogenes strain TSPY1026]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTTGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment