Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   E3S97_RS09530 Genome accession   NZ_CP047787
Coordinates   1965309..1966025 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain UP_1108     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1960309..1971025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S97_RS09500 (E3S97_09500) - 1960524..1961150 (+) 627 WP_000522375.1 nitroreductase family protein -
  E3S97_RS09505 (E3S97_09505) - 1961511..1962296 (+) 786 WP_000867944.1 carbon-nitrogen family hydrolase -
  E3S97_RS13145 hld 1962897..1962977 (-) 81 WP_000046022.1 delta-hemolysin -
  E3S97_RS09515 (E3S97_09515) agrB 1963267..1963836 (+) 570 WP_001105708.1 accessory gene regulator AgrB -
  E3S97_RS09520 (E3S97_09520) agrD 1963833..1963973 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  E3S97_RS09525 (E3S97_09525) agrC 1963998..1965290 (+) 1293 WP_001657119.1 quorum-sensing sensor histidine kinase AgrC -
  E3S97_RS09530 (E3S97_09530) agrA 1965309..1966025 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  E3S97_RS09535 (E3S97_09535) - 1966097..1966204 (+) 108 WP_031785433.1 hypothetical protein -
  E3S97_RS09540 (E3S97_09540) - 1966394..1967353 (-) 960 WP_001253295.1 carbohydrate kinase family protein -
  E3S97_RS09545 (E3S97_09545) - 1967350..1968834 (-) 1485 WP_000141419.1 sucrose-6-phosphate hydrolase -
  E3S97_RS09550 (E3S97_09550) - 1968983..1969933 (-) 951 WP_000790314.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=416185 E3S97_RS09530 WP_000688492.1 1965309..1966025(+) (agrA) [Staphylococcus aureus strain UP_1108]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=416185 E3S97_RS09530 WP_000688492.1 1965309..1966025(+) (agrA) [Staphylococcus aureus strain UP_1108]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAGGATGATCCAGCAGAATTAAGAACACGTATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCTGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACTAAGTCACACAGACTCATTGCGCATTTAGACAATCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGCTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATTG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment