Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E3S98_RS07345 Genome accession   NZ_CP047786
Coordinates   1483419..1484783 (-) Length   454 a.a.
NCBI ID   WP_160191634.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1150     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1478419..1489783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S98_RS07330 (E3S98_07330) cysE 1479240..1479887 (-) 648 WP_001805237.1 serine O-acetyltransferase -
  E3S98_RS07335 (E3S98_07335) gltX 1480310..1481764 (-) 1455 WP_001283792.1 glutamate--tRNA ligase -
  E3S98_RS07340 (E3S98_07340) - 1482321..1483394 (-) 1074 WP_001028376.1 PIN/TRAM domain-containing protein -
  E3S98_RS07345 (E3S98_07345) radA 1483419..1484783 (-) 1365 WP_160191634.1 DNA repair protein RadA Machinery gene
  E3S98_RS07350 (E3S98_07350) - 1485268..1487724 (-) 2457 WP_045174120.1 ATP-dependent Clp protease ATP-binding subunit -
  E3S98_RS07355 (E3S98_07355) - 1487738..1488745 (-) 1008 WP_000149503.1 protein arginine kinase -
  E3S98_RS07360 (E3S98_07360) - 1488735..1489301 (-) 567 WP_000882069.1 UvrB/UvrC motif-containing protein -
  E3S98_RS07365 (E3S98_07365) - 1489320..1489781 (-) 462 WP_000551762.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49834.41 Da        Isoelectric Point: 7.4578

>NTDB_id=416138 E3S98_RS07345 WP_160191634.1 1483419..1484783(-) (radA) [Staphylococcus aureus strain UP_1150]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVKKAANPKHGVKTKELAGKVQKLNSIKHETTPRVLTDSAEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVK
EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKNNIGGWTYPEGIQVIGVTTVHEALSFALHS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=416138 E3S98_RS07345 WP_160191634.1 1483419..1484783(-) (radA) [Staphylococcus aureus strain UP_1150]
TTGGCCAAGAAAAAAGTGATTTTTGAATGTATGGCTTGTGGTTATCAATCTCCTAAATGGATGGGGAAATGTCCTAATTG
TGGCGCTTGGAATCAAATGGAGGAAATTGTTAAAAAAGCAGCCAATCCTAAACATGGAGTTAAAACCAAGGAATTAGCAG
GTAAAGTACAAAAATTAAATAGTATTAAACATGAAACAACGCCGAGAGTGTTAACAGATTCAGCAGAATTCAACCGTGTA
TTAGGTGGAGGTATTGTGAGCGGATCGTTAGTACTTATTGGTGGGGATCCAGGTATTGGTAAGTCAACGTTACTTTTACA
AATTTGTGCATCGTTATCTCAAAAGAAAAAAGTACTATATATTACTGGAGAAGAATCGCTTAGTCAGACTAAATTACGTG
CAGAGCGATTAGATGAAGATTCAAGTGAATTGCAAGTATTAGCTGAAACAGATCTTGAAGTTATTTATCAAACAGTAAAA
GAAGAACAACCTGATTTATTAGTAGTGGATTCGATTCAAACAATATATCATCCTGAAATCAGCTCTGCGCCAGGTTCTGT
TTCACAAGTTCGTGAAAGTACACAAAGTTTAATGAATATTGCTAAACAAATGAACATTGCAACTTTTATAGTGGGTCATG
TAACGAAAGAAGGTCAAATTGCTGGCCCAAGATTGCTAGAACACATGGTTGATACTGTGCTTTATTTTGAAGGCGATGAA
CACCACGCATATCGAATTTTGCGAGCTGTTAAAAACCGTTTTGGTTCAACGAATGAAATGGGAATCTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTAAATAATCCATCTGAAATGTTTTTAGAAGAACGTTCAACAAATGTTCCAGGTTCAACAATTG
TTGCAACCATGGAGGGAACCAGACCACTTTTAATAGAAGTTCAAGCGCTGGTAACTCCAACGACTTTTAACAATCCGAGA
CGAATGGCAACAGGGATTGATCATAATCGATTAAGTTTGTTGATGGCTGTTTTGGAAAAGAAAGAAAATTATCTATTACA
ACAACAAGATGCTTATATCAAAGTAGCTGGCGGTGTAAAGTTAACGGAGCCAGCAGTTGATTTAAGTGTAATTGTAGCAA
CTGCATCTAGCTTTAAAGATAAAGCTGTCGACGGATTAGATTGCTATATTGGAGAAGTTGGTTTAACGGGTGAGGTACGT
CGTGTATCTCGGATAGAACAACGCGTGCAAGAGGCTGCAAAACTAGGTTTCAAACGTGTAATTATTCCTAAAAATAATAT
AGGCGGATGGACATATCCTGAAGGTATACAAGTAATAGGTGTAACTACTGTACATGAAGCATTGTCATTTGCTCTTCATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(77-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.885

100

0.676
  radA Streptococcus pneumoniae Rx1

61.589

99.78

0.615
  radA Streptococcus pneumoniae D39

61.589

99.78

0.615
  radA Streptococcus pneumoniae R6

61.589

99.78

0.615
  radA Streptococcus pneumoniae TIGR4

61.589

99.78

0.615
  radA Streptococcus mitis NCTC 12261

61.589

99.78

0.615
  radA Streptococcus mitis SK321

61.589

99.78

0.615

Multiple sequence alignment