Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H7791_RS06400 Genome accession   NZ_CP060644
Coordinates   1298514..1299113 (+) Length   199 a.a.
NCBI ID   WP_010922551.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1309     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1293514..1304113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7791_RS06370 (H7791_06365) - 1293761..1294243 (+) 483 WP_023079245.1 S-ribosylhomocysteine lyase -
  H7791_RS06375 (H7791_06370) - 1294388..1295857 (-) 1470 WP_136116825.1 cell division site-positioning protein MapZ family protein -
  H7791_RS06380 (H7791_06375) - 1295871..1297025 (-) 1155 WP_023079247.1 class I SAM-dependent RNA methyltransferase -
  H7791_RS06390 (H7791_06385) gpsB 1297470..1297796 (-) 327 WP_002983626.1 cell division regulator GpsB -
  H7791_RS06395 (H7791_06390) - 1297918..1298433 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  H7791_RS06400 (H7791_06395) recU 1298514..1299113 (+) 600 WP_010922551.1 Holliday junction resolvase RecU Machinery gene
  H7791_RS06405 (H7791_06400) pbp1a 1299100..1301265 (+) 2166 WP_009880659.1 penicillin-binding protein PBP1A -
  H7791_RS06410 (H7791_06405) pepC 1301732..1303069 (-) 1338 WP_002983616.1 aminopeptidase C -
  H7791_RS06415 (H7791_06410) nadE 1303253..1304077 (-) 825 WP_010922552.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22999.52 Da        Isoelectric Point: 9.7922

>NTDB_id=416096 H7791_RS06400 WP_010922551.1 1298514..1299113(+) (recU) [Streptococcus pyogenes strain TSPY1309]
MVNYPHNLIRQKVSSVQKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDNGS
KSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=416096 H7791_RS06400 WP_010922551.1 1298514..1299113(+) (recU) [Streptococcus pyogenes strain TSPY1309]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAAATAAGGTGGACTTCGCCAATAG
AGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTCACAAAAAAC
CTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCATACTTTAGACAAGCT
TCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAAAACAGCTAT
GCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCTTTGTCCTTC
TTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGATAATGGCAGT
AAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCCTTATTTAAA
CATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

98.995

0.508

Multiple sequence alignment