Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   H7791_RS04480 Genome accession   NZ_CP060644
Coordinates   901665..902735 (-) Length   356 a.a.
NCBI ID   WP_032464390.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1309     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 896665..907735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7791_RS04460 (H7791_04465) citX 897244..897822 (+) 579 WP_011054513.1 citrate lyase holo-[acyl-carrier protein] synthase -
  H7791_RS04465 (H7791_04470) - 897837..899231 (+) 1395 WP_168672407.1 oxaloacetate decarboxylase subunit alpha -
  H7791_RS04470 (H7791_04475) citC 899341..900393 (-) 1053 WP_136116721.1 [citrate (pro-3S)-lyase] ligase -
  H7791_RS04475 (H7791_04480) - 900482..900964 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  H7791_RS04480 (H7791_04485) xerS 901665..902735 (-) 1071 WP_032464390.1 tyrosine recombinase XerS Machinery gene
  H7791_RS04485 (H7791_04490) - 903209..903907 (+) 699 WP_011528664.1 XRE family transcriptional regulator -
  H7791_RS04490 (H7791_04495) ffh 904024..905586 (-) 1563 WP_136116720.1 signal recognition particle protein -
  H7791_RS04495 (H7791_04500) - 905601..905933 (-) 333 WP_227874766.1 putative DNA-binding protein -
  H7791_RS04500 (H7791_04505) - 906031..906729 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=416075 H7791_RS04480 WP_032464390.1 901665..902735(-) (xerS) [Streptococcus pyogenes strain TSPY1309]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDVT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=416075 H7791_RS04480 WP_032464390.1 901665..902735(-) (xerS) [Streptococcus pyogenes strain TSPY1309]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGTTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803