Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   E3T03_RS07485 Genome accession   NZ_CP047783
Coordinates   1572954..1573928 (-) Length   324 a.a.
NCBI ID   WP_160190983.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1313     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567954..1578928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T03_RS07445 (E3T03_07445) gcvT 1568455..1569546 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  E3T03_RS07450 (E3T03_07450) - 1569705..1570229 (-) 525 WP_001015116.1 shikimate kinase -
  E3T03_RS07455 (E3T03_07455) - 1570219..1570365 (-) 147 WP_001789879.1 hypothetical protein -
  E3T03_RS07460 (E3T03_07460) comGF 1570462..1570959 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3T03_RS07465 (E3T03_07465) comGE 1570877..1571176 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3T03_RS07470 (E3T03_07470) comGD 1571163..1571609 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3T03_RS07475 (E3T03_07475) comGC 1571587..1571898 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E3T03_RS07480 (E3T03_07480) comGB 1571912..1572982 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3T03_RS07485 (E3T03_07485) comGA 1572954..1573928 (-) 975 WP_160190983.1 competence type IV pilus ATPase ComGA Machinery gene
  E3T03_RS07490 (E3T03_07490) - 1573980..1574603 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3T03_RS07495 (E3T03_07495) - 1574600..1574929 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3T03_RS07500 (E3T03_07500) - 1574929..1575915 (-) 987 WP_000161315.1 ROK family glucokinase -
  E3T03_RS07505 (E3T03_07505) - 1575912..1576115 (-) 204 WP_000087561.1 YqgQ family protein -
  E3T03_RS07510 (E3T03_07510) - 1576096..1577559 (-) 1464 WP_001017869.1 rhomboid family protein -
  E3T03_RS07515 (E3T03_07515) - 1577571..1578110 (-) 540 WP_000164548.1 5-formyltetrahydrofolate cyclo-ligase -
  E3T03_RS07520 (E3T03_07520) rpmG 1578319..1578468 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36955.01 Da        Isoelectric Point: 8.4460

>NTDB_id=416010 E3T03_RS07485 WP_160190983.1 1572954..1573928(-) (comGA) [Staphylococcus aureus strain UP_1313]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYIFNDFKHLMNKKQELLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=416010 E3T03_RS07485 WP_160190983.1 1572954..1573928(-) (comGA) [Staphylococcus aureus strain UP_1313]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATATATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGAATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCCTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTAATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAGGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.383

100

0.994
  comGA Staphylococcus aureus N315

99.383

100

0.994

Multiple sequence alignment