Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   H7792_RS04065 Genome accession   NZ_CP060643
Coordinates   825740..826810 (+) Length   356 a.a.
NCBI ID   WP_111713766.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820740..831810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7792_RS04045 (H7792_04035) - 821751..822449 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  H7792_RS04050 (H7792_04040) - 822547..822879 (+) 333 WP_002989745.1 putative DNA-binding protein -
  H7792_RS04055 (H7792_04045) ffh 822894..824456 (+) 1563 WP_228650390.1 signal recognition particle protein -
  H7792_RS04060 (H7792_04050) - 824573..825271 (-) 699 WP_002993300.1 XRE family transcriptional regulator -
  H7792_RS04065 (H7792_04055) xerS 825740..826810 (+) 1071 WP_111713766.1 tyrosine recombinase XerS Machinery gene
  H7792_RS04070 (H7792_04060) - 827511..827993 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  H7792_RS04075 (H7792_04065) citC 828082..829134 (+) 1053 WP_111713768.1 [citrate (pro-3S)-lyase] ligase -
  H7792_RS04080 (H7792_04070) - 829246..830640 (-) 1395 WP_168391558.1 oxaloacetate decarboxylase subunit alpha -
  H7792_RS04085 (H7792_04075) citX 830655..831233 (-) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41503.63 Da        Isoelectric Point: 9.5552

>NTDB_id=415988 H7792_RS04065 WP_111713766.1 825740..826810(+) (xerS) [Streptococcus pyogenes strain TSPY416]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYMDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=415988 H7792_RS04065 WP_111713766.1 825740..826810(+) (xerS) [Streptococcus pyogenes strain TSPY416]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCGTACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATATGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATCTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(174-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806